Analysis of interatomic Contacts of Structural Units in PDB entry:
6DLD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DLD entry

There are 4 chains in PDB entry 6DLD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 36	ARG 308
B	ALA 43	LEU 312
C	PRO 38	MET 304
D	ALA 37	LEU 312

There are 8 helices in PDB entry 6DLD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	103	107	Right-handed 310
Helix 2	AA2	A	186	190	Right-handed 310
Helix 3	AA3	A	261	263	Right-handed 310
Helix 4	AA4	B	109	113	Right-handed 310
Helix 5	AA5	C	103	107	Right-handed 310
Helix 6	AA6	C	261	263	Right-handed 310
Helix 7	AA7	D	109	113	Right-handed 310
Helix 8	AA8	D	288	292	Right-handed 310

There are 25 sheets in PDB entry 6DLD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	45	first strand
Strand 2	A	120	138	parallel
Strand 3	A	108	115	anti-parallel
Strand 4	A	62	67	anti-parallel
Strand 5	A	70	74	anti-parallel
Strand 6	A	77	78	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	45	first strand
Strand 2	A	120	138	parallel
Strand 3	A	149	159	anti-parallel
Strand 4	A	179	183	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	55	first strand
Strand 2	A	94	99	anti-parallel
Strand 3	A	85	89	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	145	first strand
Strand 2	A	208	224	parallel
Strand 3	A	191	198	anti-parallel
Strand 4	A	163	168	anti-parallel
Strand 5	A	174	175	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	145	first strand
Strand 2	A	208	224	parallel
Strand 3	A	234	243	anti-parallel
Strand 4	A	273	278	anti-parallel
Strand 5	A	265	269	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	299	307	parallel
Strand 3	A	287	294	anti-parallel
Strand 4	A	247	252	anti-parallel
Strand 5	A	255	256	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	127	144	parallel
Strand 3	B	114	121	anti-parallel
Strand 4	B	68	73	anti-parallel
Strand 5	B	76	80	anti-parallel
Strand 6	B	83	84	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	127	144	parallel
Strand 3	B	156	165	anti-parallel
Strand 4	B	187	190	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	102	105	anti-parallel
Strand 3	B	91	94	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	171	first strand
Strand 2	B	199	206	anti-parallel
Strand 3	B	214	219	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	229	first strand
Strand 2	B	246	250	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	254	259	anti-parallel
Strand 3	B	293	300	anti-parallel
Strand 4	B	305	312	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	45	first strand
Strand 2	C	120	138	parallel
Strand 3	C	108	115	anti-parallel
Strand 4	C	62	67	anti-parallel
Strand 5	C	70	74	anti-parallel
Strand 6	C	77	78	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	45	first strand
Strand 2	C	120	138	parallel
Strand 3	C	150	159	anti-parallel
Strand 4	C	179	182	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	55	first strand
Strand 2	C	94	99	anti-parallel
Strand 3	C	85	89	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	145	first strand
Strand 2	C	207	224	parallel
Strand 3	C	191	198	anti-parallel
Strand 4	C	163	168	anti-parallel
Strand 5	C	174	176	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	145	first strand
Strand 2	C	207	224	parallel
Strand 3	C	234	243	anti-parallel
Strand 4	C	273	278	anti-parallel
Strand 5	C	265	269	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	252	first strand
Strand 2	C	289	294	anti-parallel
Strand 3	C	299	303	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	51	first strand
Strand 2	D	127	144	parallel
Strand 3	D	114	120	anti-parallel
Strand 4	D	71	73	anti-parallel
Strand 5	D	76	77	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	51	first strand
Strand 2	D	127	144	parallel
Strand 3	D	156	165	anti-parallel
Strand 4	D	187	190	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	59	first strand
Strand 2	D	102	105	anti-parallel
Strand 3	D	91	93	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	80	first strand
Strand 2	D	83	84	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	151	first strand
Strand 2	D	213	232	parallel
Strand 3	D	199	206	anti-parallel
Strand 4	D	169	171	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	151	first strand
Strand 2	D	213	232	parallel
Strand 3	D	243	250	anti-parallel
Strand 4	D	279	282	anti-parallel
Strand 5	D	273	275	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	259	first strand
Strand 2	D	293	300	anti-parallel
Strand 3	D	305	312	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DLD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DLD