Analysis of interatomic Contacts of Structural Units in PDB entry:
6DLE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DLE entry

There are 2 chains in PDB entry 6DLE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 38ARG 308
B
 PRO 38ARG 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 6DLE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
103 107Right-handed 310
Helix 2
AA2
A
261 263Right-handed 310
Helix 3
AA3
B
103 107Right-handed 310
Helix 4
AA4
B
186 190Right-handed 310
Helix 5
AA5
B
261 263Right-handed 310
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There are 12 sheets in PDB entry 6DLE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 45first strand
Strand 2
A
120 138parallel
Strand 3
A
108 115anti-parallel
Strand 4
A
62 67anti-parallel
Strand 5
A
70 74anti-parallel
Strand 6
A
77 78anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 45first strand
Strand 2
A
120 138parallel
Strand 3
A
149 159anti-parallel
Strand 4
A
179 183anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
94 99anti-parallel
Strand 3
A
85 91anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
208 224parallel
Strand 3
A
191 198anti-parallel
Strand 4
A
163 168anti-parallel
Strand 5
A
174 175anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
208 224parallel
Strand 3
A
234 243anti-parallel
Strand 4
A
273 278anti-parallel
Strand 5
A
265 269anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 227first strand
Strand 2
A
299 307parallel
Strand 3
A
287 294anti-parallel
Strand 4
A
247 252anti-parallel
Strand 5
A
255 256anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 45first strand
Strand 2
B
120 130parallel
Strand 3
B
108 115anti-parallel
Strand 4
B
62 67anti-parallel
Strand 5
B
70 74anti-parallel
Strand 6
B
77 78anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
94 99anti-parallel
Strand 3
B
85 91anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 138first strand
Strand 2
B
149 157anti-parallel
Strand 3
B
179 183anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 145first strand
Strand 2
B
208 224parallel
Strand 3
B
191 198anti-parallel
Strand 4
B
163 168anti-parallel
Strand 5
B
174 175anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 145first strand
Strand 2
B
208 224parallel
Strand 3
B
234 243anti-parallel
Strand 4
B
273 278anti-parallel
Strand 5
B
265 269anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 227first strand
Strand 2
B
299 307parallel
Strand 3
B
287 294anti-parallel
Strand 4
B
247 252anti-parallel
Strand 5
B
255 256anti-parallel
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