Analysis of interatomic Contacts of Structural Units in PDB entry:
6DLU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DLU entry

There are 2 chains in PDB entry 6DLU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 7	THR 748
P	MET 1	THR 747

There are 54 helices in PDB entry 6DLU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	8	19	Right-handed alpha
Helix 2	AA2	B	43	53	Right-handed alpha
Helix 3	AA3	B	93	110	Right-handed alpha
Helix 4	AA4	B	151	165	Right-handed alpha
Helix 5	AA5	B	180	184	Right-handed 310
Helix 6	AA6	B	185	194	Right-handed alpha
Helix 7	AA7	B	216	221	Right-handed alpha
Helix 8	AA8	B	238	244	Right-handed alpha
Helix 9	AA9	B	247	262	Right-handed alpha
Helix 10	AB1	B	273	290	Right-handed alpha
Helix 11	AB2	B	292	309	Right-handed alpha
Helix 12	AB3	B	310	315	Right-handed alpha
Helix 13	AB4	B	321	345	Right-handed alpha
Helix 14	AB5	B	360	368	Right-handed alpha
Helix 15	AB6	B	369	376	Right-handed alpha
Helix 16	AB7	B	381	395	Right-handed alpha
Helix 17	AB8	B	406	417	Right-handed alpha
Helix 18	AB9	B	420	442	Right-handed alpha
Helix 19	AC1	B	452	482	Right-handed alpha
Helix 20	AC2	B	502	507	Right-handed alpha
Helix 21	AC3	B	609	624	Right-handed alpha
Helix 22	AC4	B	631	636	Right-handed 310
Helix 23	AC5	B	655	689	Right-handed alpha
Helix 24	AC6	B	689	700	Right-handed alpha
Helix 25	AC7	B	700	706	Right-handed alpha
Helix 26	AC8	B	718	748	Right-handed alpha
Helix 27	AC9	P	4	23	Right-handed alpha
Helix 28	AD1	P	43	53	Right-handed alpha
Helix 29	AD2	P	93	109	Right-handed alpha
Helix 30	AD3	P	151	165	Right-handed alpha
Helix 31	AD4	P	180	183	Right-handed 310
Helix 32	AD5	P	184	194	Right-handed alpha
Helix 33	AD6	P	206	210	Right-handed 310
Helix 34	AD7	P	216	221	Right-handed alpha
Helix 35	AD8	P	238	244	Right-handed alpha
Helix 36	AD9	P	247	262	Right-handed alpha
Helix 37	AE1	P	273	312	Right-handed alpha
Helix 38	AE2	P	313	315	Right-handed 310
Helix 39	AE3	P	321	344	Right-handed alpha
Helix 40	AE4	P	359	367	Right-handed alpha
Helix 41	AE5	P	371	376	Right-handed alpha
Helix 42	AE6	P	383	396	Right-handed alpha
Helix 43	AE7	P	406	418	Right-handed alpha
Helix 44	AE8	P	420	442	Right-handed alpha
Helix 45	AE9	P	443	447	Right-handed 310
Helix 46	AF1	P	452	482	Right-handed alpha
Helix 47	AF2	P	502	508	Right-handed alpha
Helix 48	AF3	P	511	516	Right-handed alpha
Helix 49	AF4	P	609	624	Right-handed alpha
Helix 50	AF5	P	654	689	Right-handed alpha
Helix 51	AF6	P	690	699	Right-handed alpha
Helix 52	AF7	P	700	708	Right-handed alpha
Helix 53	AF8	P	710	715	Right-handed alpha
Helix 54	AF9	P	718	747	Right-handed alpha

There are 5 sheets in PDB entry 6DLU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	120	126	parallel
Strand 3	B	80	83	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	120	126	parallel
Strand 3	B	69	71	parallel
Strand 4	B	134	136	anti-parallel
Strand 5	B	33	37	parallel
Strand 6	B	169	176	parallel
Strand 7	B	200	205	parallel
Strand 8	B	231	233	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	566	first strand
Strand 2	B	549	553	anti-parallel
Strand 3	B	539	545	anti-parallel
Strand 4	B	522	528	anti-parallel
Strand 5	B	603	607	anti-parallel
Strand 6	B	584	588	anti-parallel
Strand 7	B	573	574	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	80	83	first strand
Strand 2	P	120	126	anti-parallel
Strand 3	P	69	75	parallel
Strand 4	P	133	136	anti-parallel
Strand 5	P	33	37	parallel
Strand 6	P	169	176	parallel
Strand 7	P	200	205	parallel
Strand 8	P	231	233	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	565	566	first strand
Strand 2	P	549	553	anti-parallel
Strand 3	P	539	545	anti-parallel
Strand 4	P	522	528	anti-parallel
Strand 5	P	604	606	anti-parallel
Strand 6	P	585	587	anti-parallel
Strand 7	P	573	574	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DLU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DLU