Analysis of interatomic Contacts of Structural Units in PDB entry:
6DLY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DLY entry

There are 10 chains in PDB entry 6DLY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	LEU 398
B	THR 9	PRO 399
C	LEU 1005	LEU 1005
C	LEU 1007	LEU 1007
C	PRO 1009	PRO 1009
C	GLY 1011	GLY 1011
D	LEU 1005	LEU 1005
D	LEU 1007	LEU 1007
D	PRO 1009	PRO 1009
D	GLY 1011	GLY 1011

There are 24 helices in PDB entry 6DLY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	30	Right-handed alpha
Helix 2	AA2	A	37	40	Right-handed 310
Helix 3	AA3	A	81	91	Right-handed alpha
Helix 4	AA4	A	120	124	Right-handed 310
Helix 5	AA5	A	138	151	Right-handed alpha
Helix 6	AA6	A	159	162	Right-handed 310
Helix 7	AA7	A	206	214	Right-handed alpha
Helix 8	AA8	A	228	232	Right-handed 310
Helix 9	AA9	A	258	263	Right-handed 310
Helix 10	AB1	A	275	286	Right-handed alpha
Helix 11	AB2	A	287	293	Right-handed 310
Helix 12	AB3	A	334	346	Right-handed alpha
Helix 13	AB4	B	17	29	Right-handed alpha
Helix 14	AB5	B	37	40	Right-handed 310
Helix 15	AB6	B	81	91	Right-handed alpha
Helix 16	AB7	B	120	124	Right-handed 310
Helix 17	AB8	B	139	151	Right-handed alpha
Helix 18	AB9	B	159	162	Right-handed 310
Helix 19	AC1	B	206	213	Right-handed alpha
Helix 20	AC2	B	228	232	Right-handed 310
Helix 21	AC3	B	259	263	Right-handed 310
Helix 22	AC4	B	275	286	Right-handed alpha
Helix 23	AC5	B	287	293	Right-handed 310
Helix 24	AC6	B	334	345	Right-handed alpha

There are 8 sheets in PDB entry 6DLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	A	12	15	anti-parallel
Strand 3	A	96	101	anti-parallel
Strand 4	A	104	109	anti-parallel
Strand 5	A	112	117	anti-parallel
Strand 6	B	314	321	anti-parallel
Strand 7	B	303	310	anti-parallel
Strand 8	B	295	300	anti-parallel
Strand 9	B	329	333	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	80	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	51	57	anti-parallel
Strand 4	A	61	67	anti-parallel
Strand 5	A	245	250	anti-parallel
Strand 6	A	237	242	anti-parallel
Strand 7	A	222	225	anti-parallel
Strand 8	A	133	137	anti-parallel
Strand 9	A	192	193	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	205	first strand
Strand 2	A	164	170	anti-parallel
Strand 3	A	173	179	anti-parallel
Strand 4	A	183	190	anti-parallel
Strand 5	A	389	393	anti-parallel
Strand 6	A	361	366	anti-parallel
Strand 7	A	349	354	anti-parallel
Strand 8	A	269	274	anti-parallel
Strand 9	A	323	326	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	382	383	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	333	first strand
Strand 2	A	295	300	anti-parallel
Strand 3	A	303	310	anti-parallel
Strand 4	A	314	321	anti-parallel
Strand 5	B	112	117	anti-parallel
Strand 6	B	104	109	anti-parallel
Strand 7	B	95	101	anti-parallel
Strand 8	B	12	16	anti-parallel
Strand 9	B	70	73	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	80	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	51	56	anti-parallel
Strand 4	B	61	68	anti-parallel
Strand 5	B	245	250	anti-parallel
Strand 6	B	237	242	anti-parallel
Strand 7	B	221	225	anti-parallel
Strand 8	B	135	138	anti-parallel
Strand 9	B	192	193	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	205	first strand
Strand 2	B	164	170	anti-parallel
Strand 3	B	173	179	anti-parallel
Strand 4	B	183	190	anti-parallel
Strand 5	B	389	393	anti-parallel
Strand 6	B	361	366	anti-parallel
Strand 7	B	349	354	anti-parallel
Strand 8	B	269	274	anti-parallel
Strand 9	B	323	326	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	382	383	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DLY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DLY