Analysis of interatomic Contacts of Structural Units in PDB entry:
6DM4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DM4 entry

There are 10 chains in PDB entry 6DM4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 226LEU 344
E
 PRO 902SER 903
E
 VAL 905GLN 908
B
 SER 226LEU 344
C
 SER 226LEU 344
G
 PRO 902SER 903
G
 VAL 905VAL 907
D
 SER 226LEU 344
H
 PRO 902SER 903
H
 VAL 905GLN 908
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6DM4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
227 238Right-handed alpha
Helix 2
AA2
A
248 259Right-handed alpha
Helix 3
AA3
A
269 274Right-handed alpha
Helix 4
AA4
A
324 344Right-handed alpha
Helix 5
AA5
B
227 238Right-handed alpha
Helix 6
AA6
B
248 259Right-handed alpha
Helix 7
AA7
B
269 274Right-handed alpha
Helix 8
AA8
B
324 343Right-handed alpha
Helix 9
AA9
C
227 238Right-handed alpha
Helix 10
AB1
C
248 257Right-handed alpha
Helix 11
AB2
C
269 273Right-handed 310
Helix 12
AB3
C
324 344Right-handed alpha
Helix 13
AB4
D
228 239Right-handed alpha
Helix 14
AB5
D
248 259Right-handed alpha
Helix 15
AB6
D
269 274Right-handed alpha
Helix 16
AB7
D
324 344Right-handed alpha
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There are 4 sheets in PDB entry 6DM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
279 288anti-parallel
Strand 3
A
291 300anti-parallel
Strand 4
A
305 308anti-parallel
Strand 5
A
315 318anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 267first strand
Strand 2
B
280 287anti-parallel
Strand 3
B
292 299anti-parallel
Strand 4
B
305 308anti-parallel
Strand 5
B
315 318anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
264 267first strand
Strand 2
C
280 288anti-parallel
Strand 3
C
291 299anti-parallel
Strand 4
C
305 308anti-parallel
Strand 5
C
315 318anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
264 267first strand
Strand 2
D
279 287anti-parallel
Strand 3
D
292 300anti-parallel
Strand 4
D
305 308anti-parallel
Strand 5
D
315 318anti-parallel
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