Analysis of interatomic Contacts of Structural Units in PDB entry:
6DM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DM6 entry

There are 10 chains in PDB entry 6DM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1VAL 379
B
 HIS -1VAL 379
C
 LEU 5LEU 5
C
 LEU 7LEU 7
C
 PRO 9PRO 9
C
 GLY 11GLY 11
D
 LEU 5LEU 5
D
 LEU 7LEU 7
D
 PRO 9PRO 9
D
 GLY 11GLY 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6DM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 22Right-handed alpha
Helix 2
AA2
A
72 80Right-handed alpha
Helix 3
AA3
A
93 95Right-handed 310
Helix 4
AA4
A
112 116Right-handed 310
Helix 5
AA5
A
132 141Right-handed alpha
Helix 6
AA6
A
142 146Right-handed 310
Helix 7
AA7
A
152 155Right-handed 310
Helix 8
AA8
A
197 208Right-handed alpha
Helix 9
AA9
A
247 252Right-handed 310
Helix 10
AB1
A
264 276Right-handed alpha
Helix 11
AB2
A
277 278Right-handed 310
Helix 12
AB3
A
279 283Right-handed 310
Helix 13
AB4
A
315 318Right-handed 310
Helix 14
AB5
A
333 344Right-handed alpha
Helix 15
AB6
B
8 22Right-handed alpha
Helix 16
AB7
B
72 80Right-handed alpha
Helix 17
AB8
B
93 95Right-handed 310
Helix 18
AB9
B
112 116Right-handed 310
Helix 19
AC1
B
132 141Right-handed alpha
Helix 20
AC2
B
142 146Right-handed 310
Helix 21
AC3
B
152 155Right-handed 310
Helix 22
AC4
B
197 208Right-handed alpha
Helix 23
AC5
B
248 252Right-handed 310
Helix 24
AC6
B
264 276Right-handed alpha
Helix 25
AC7
B
277 278Right-handed 310
Helix 26
AC8
B
279 283Right-handed 310
Helix 27
AC9
B
333 342Right-handed alpha
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There are 6 sheets in PDB entry 6DM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
3 7anti-parallel
Strand 3
A
86 91anti-parallel
Strand 4
A
97 100anti-parallel
Strand 5
A
104 108anti-parallel
Strand 6
B
304 311anti-parallel
Strand 7
B
293 300anti-parallel
Strand 8
B
285 289anti-parallel
Strand 9
B
328 332anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
33 39anti-parallel
Strand 3
A
42 48anti-parallel
Strand 4
A
52 59anti-parallel
Strand 5
A
234 239anti-parallel
Strand 6
A
225 230anti-parallel
Strand 7
A
216 221anti-parallel
Strand 8
A
126 131anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 196first strand
Strand 2
A
157 163anti-parallel
Strand 3
A
166 172anti-parallel
Strand 4
A
176 183anti-parallel
Strand 5
A
367 374anti-parallel
Strand 6
A
360 364anti-parallel
Strand 7
A
348 353anti-parallel
Strand 8
A
258 263anti-parallel
Strand 9
A
320 322anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 332first strand
Strand 2
A
285 289anti-parallel
Strand 3
A
293 300anti-parallel
Strand 4
A
304 311anti-parallel
Strand 5
B
104 108anti-parallel
Strand 6
B
97 100anti-parallel
Strand 7
B
86 91anti-parallel
Strand 8
B
3 7anti-parallel
Strand 9
B
61 64anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 71first strand
Strand 2
B
33 39anti-parallel
Strand 3
B
42 48anti-parallel
Strand 4
B
52 59anti-parallel
Strand 5
B
234 239anti-parallel
Strand 6
B
225 230anti-parallel
Strand 7
B
216 221anti-parallel
Strand 8
B
126 131anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 196first strand
Strand 2
B
157 163anti-parallel
Strand 3
B
166 172anti-parallel
Strand 4
B
176 183anti-parallel
Strand 5
B
367 374anti-parallel
Strand 6
B
360 364anti-parallel
Strand 7
B
348 353anti-parallel
Strand 8
B
258 263anti-parallel
Strand 9
B
320 322anti-parallel
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