Analysis of interatomic Contacts of Structural Units in PDB entry:
6DMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DMA entry

There are 8 chains in PDB entry 6DMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3SER 77
B
 THR 78TYR 151
C
 GLU 3GLU 75
D
 LYS 81GLU 153
E
 GLU 3SER 77
F
 LEU 82GLU 153
G
 ARG 2ARG 76
H
 LYS 81ILE 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6DMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 36Right-handed alpha
Helix 2
AA2
A
42 77Right-handed alpha
Helix 3
AA3
B
79 114Right-handed alpha
Helix 4
AA4
B
118 151Right-handed alpha
Helix 5
AA5
C
4 37Right-handed alpha
Helix 6
AA6
C
41 75Right-handed alpha
Helix 7
AA7
D
82 113Right-handed alpha
Helix 8
AA8
D
120 153Right-handed alpha
Helix 9
AA9
E
4 37Right-handed alpha
Helix 10
AB1
E
43 77Right-handed alpha
Helix 11
AB2
F
83 114Right-handed alpha
Helix 12
AB3
F
119 153Right-handed alpha
Helix 13
AB4
G
3 37Right-handed alpha
Helix 14
AB5
G
43 76Right-handed alpha
Helix 15
AB6
H
82 114Right-handed alpha
Helix 16
AB7
H
122 149Right-handed alpha
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There are no sheets in PDB entry 6DMA
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il