Analysis of interatomic Contacts of Structural Units in PDB entry:
6DMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DMB entry

There is 1 chain in PDB entry 6DMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 73SER 1185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 6DMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 96Right-handed alpha
Helix 2
AA2
A
97 115Right-handed alpha
Helix 3
AA3
A
116 119Right-handed 310
Helix 4
AA4
A
124 129Right-handed alpha
Helix 5
AA5
A
136 147Right-handed alpha
Helix 6
AA6
A
171 185Right-handed alpha
Helix 7
AA7
A
216 222Right-handed alpha
Helix 8
AA8
A
230 234Right-handed 310
Helix 9
AA9
A
236 240Right-handed 310
Helix 10
AB1
A
255 259Right-handed 310
Helix 11
AB2
A
260 271Right-handed alpha
Helix 12
AB3
A
277 285Right-handed alpha
Helix 13
AB4
A
338 343Right-handed alpha
Helix 14
AB5
A
368 376Right-handed alpha
Helix 15
AB6
A
388 411Right-handed alpha
Helix 16
AB7
A
425 436Right-handed alpha
Helix 17
AB8
A
439 457Right-handed alpha
Helix 18
AB9
A
470 491Right-handed alpha
Helix 19
AC1
A
498 503Right-handed alpha
Helix 20
AC2
A
506 526Right-handed alpha
Helix 21
AC3
A
539 564Right-handed alpha
Helix 22
AC4
A
567 605Right-handed alpha
Helix 23
AC5
A
732 741Right-handed alpha
Helix 24
AC6
A
742 745Right-handed 310
Helix 25
AC7
A
746 749Right-handed 310
Helix 26
AC8
A
750 770Right-handed alpha
Helix 27
AC9
A
785 798Right-handed alpha
Helix 28
AD1
A
815 828Right-handed alpha
Helix 29
AD2
A
843 863Right-handed alpha
Helix 30
AD3
A
877 888Right-handed alpha
Helix 31
AD4
A
899 903Right-handed 310
Helix 32
AD5
A
919 930Right-handed alpha
Helix 33
AD6
A
930 937Right-handed alpha
Helix 34
AD7
A
984 1004Right-handed alpha
Helix 35
AD8
A
1013 1018Right-handed alpha
Helix 36
AD9
A
1019 1022Right-handed 310
Helix 37
AE1
A
1026 1046Right-handed alpha
Helix 38
AE2
A
1052 1075Right-handed alpha
Helix 39
AE3
A
1080 1106Right-handed alpha
Helix 40
AE4
A
1112 1122Right-handed alpha
Helix 41
AE5
A
1123 1138Right-handed alpha
Helix 42
AE6
A
1146 1155Right-handed alpha
Helix 43
AE7
A
1155 1178Right-handed alpha
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There are 5 sheets in PDB entry 6DMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 363first strand
Strand 2
A
157 162anti-parallel
Strand 3
A
417 421anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 191first strand
Strand 2
A
196 197anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 331first strand
Strand 2
A
335 336anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
354 356anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
975 978first strand
Strand 2
A
801 807anti-parallel
Strand 3
A
1008 1012anti-parallel
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