Analysis of interatomic Contacts of Structural Units in PDB entry:
6DMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DMO entry

There is 1 chain in PDB entry 6DMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 73SER 1185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6DMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 97Right-handed alpha
Helix 2
AA2
A
97 115Right-handed alpha
Helix 3
AA3
A
136 147Right-handed alpha
Helix 4
AA4
A
171 187Right-handed alpha
Helix 5
AA5
A
216 223Right-handed alpha
Helix 6
AA6
A
230 234Right-handed 310
Helix 7
AA7
A
235 241Right-handed alpha
Helix 8
AA8
A
255 259Right-handed 310
Helix 9
AA9
A
260 271Right-handed alpha
Helix 10
AB1
A
276 285Right-handed alpha
Helix 11
AB2
A
338 343Right-handed alpha
Helix 12
AB3
A
368 376Right-handed alpha
Helix 13
AB4
A
389 411Right-handed alpha
Helix 14
AB5
A
424 433Right-handed alpha
Helix 15
AB6
A
434 435Right-handed 310
Helix 16
AB7
A
436 437Right-handed 310
Helix 17
AB8
A
438 457Right-handed alpha
Helix 18
AB9
A
466 491Right-handed alpha
Helix 19
AC1
A
498 526Right-handed alpha
Helix 20
AC2
A
538 563Right-handed alpha
Helix 21
AC3
A
567 604Right-handed alpha
Helix 22
AC4
A
732 744Right-handed alpha
Helix 23
AC5
A
750 770Right-handed alpha
Helix 24
AC6
A
785 798Right-handed alpha
Helix 25
AC7
A
815 829Right-handed alpha
Helix 26
AC8
A
843 863Right-handed alpha
Helix 27
AC9
A
877 885Right-handed alpha
Helix 28
AD1
A
900 905Right-handed alpha
Helix 29
AD2
A
919 930Right-handed alpha
Helix 30
AD3
A
930 937Right-handed alpha
Helix 31
AD4
A
983 1003Right-handed alpha
Helix 32
AD5
A
1013 1019Right-handed alpha
Helix 33
AD6
A
1026 1046Right-handed alpha
Helix 34
AD7
A
1052 1075Right-handed alpha
Helix 35
AD8
A
1081 1106Right-handed alpha
Helix 36
AD9
A
1112 1138Right-handed alpha
Helix 37
AE1
A
1139 1141Right-handed 310
Helix 38
AE2
A
1146 1178Right-handed alpha
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There are 4 sheets in PDB entry 6DMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 366first strand
Strand 2
A
154 162anti-parallel
Strand 3
A
417 422anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 191first strand
Strand 2
A
196 197anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
354 356anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
972 978first strand
Strand 2
A
801 808anti-parallel
Strand 3
A
1007 1012anti-parallel
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