Analysis of interatomic Contacts of Structural Units in PDB entry:
6DMR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DMR entry

There are 4 chains in PDB entry 6DMR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 29	ASP 638
B	TRP 29	ASP 638
C	TRP 29	ASP 638
D	TRP 29	ASP 638

There are128 helices in PDB entry 6DMR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	47	Right-handed alpha
Helix 2	AA2	A	47	56	Right-handed alpha
Helix 3	AA3	A	57	67	Right-handed alpha
Helix 4	AA4	A	81	90	Right-handed alpha
Helix 5	AA5	A	91	102	Right-handed alpha
Helix 6	AA6	A	103	108	Right-handed 310
Helix 7	AA7	A	119	128	Right-handed alpha
Helix 8	AA8	A	129	139	Right-handed alpha
Helix 9	AA9	A	165	174	Right-handed alpha
Helix 10	AB1	A	176	185	Right-handed alpha
Helix 11	AB2	A	193	197	Right-handed 310
Helix 12	AB3	A	198	205	Right-handed alpha
Helix 13	AB4	A	209	223	Right-handed alpha
Helix 14	AB5	A	231	235	Right-handed 310
Helix 15	AB6	A	242	251	Right-handed alpha
Helix 16	AB7	A	252	261	Right-handed alpha
Helix 17	AB8	A	280	285	Right-handed alpha
Helix 18	AB9	A	291	298	Right-handed alpha
Helix 19	AC1	A	301	309	Right-handed 310
Helix 20	AC2	A	310	349	Right-handed alpha
Helix 21	AC3	A	379	408	Right-handed alpha
Helix 22	AC4	A	412	417	Right-handed alpha
Helix 23	AC5	A	422	445	Right-handed alpha
Helix 24	AC6	A	450	464	Right-handed alpha
Helix 25	AC7	A	465	472	Right-handed 310
Helix 26	AC8	A	477	511	Right-handed alpha
Helix 27	AC9	A	525	538	Right-handed alpha
Helix 28	AD1	A	552	567	Right-handed alpha
Helix 29	AD2	A	569	585	Right-handed alpha
Helix 30	AD3	A	587	608	Right-handed alpha
Helix 31	AD4	A	609	613	Right-handed 310
Helix 32	AD5	A	621	624	Right-handed 310
Helix 33	AD6	B	30	47	Right-handed alpha
Helix 34	AD7	B	47	56	Right-handed alpha
Helix 35	AD8	B	57	67	Right-handed alpha
Helix 36	AD9	B	81	90	Right-handed alpha
Helix 37	AE1	B	91	102	Right-handed alpha
Helix 38	AE2	B	103	108	Right-handed 310
Helix 39	AE3	B	119	128	Right-handed alpha
Helix 40	AE4	B	129	139	Right-handed alpha
Helix 41	AE5	B	165	174	Right-handed alpha
Helix 42	AE6	B	176	185	Right-handed alpha
Helix 43	AE7	B	193	197	Right-handed 310
Helix 44	AE8	B	198	205	Right-handed alpha
Helix 45	AE9	B	209	223	Right-handed alpha
Helix 46	AF1	B	231	235	Right-handed 310
Helix 47	AF2	B	242	251	Right-handed alpha
Helix 48	AF3	B	252	261	Right-handed alpha
Helix 49	AF4	B	280	285	Right-handed alpha
Helix 50	AF5	B	291	298	Right-handed alpha
Helix 51	AF6	B	301	309	Right-handed 310
Helix 52	AF7	B	310	349	Right-handed alpha
Helix 53	AF8	B	379	408	Right-handed alpha
Helix 54	AF9	B	412	417	Right-handed alpha
Helix 55	AG1	B	422	445	Right-handed alpha
Helix 56	AG2	B	450	464	Right-handed alpha
Helix 57	AG3	B	465	472	Right-handed 310
Helix 58	AG4	B	477	511	Right-handed alpha
Helix 59	AG5	B	525	538	Right-handed alpha
Helix 60	AG6	B	552	567	Right-handed alpha
Helix 61	AG7	B	569	585	Right-handed alpha
Helix 62	AG8	B	587	608	Right-handed alpha
Helix 63	AG9	B	609	613	Right-handed 310
Helix 64	AH1	B	621	624	Right-handed 310
Helix 65	AH2	C	30	47	Right-handed alpha
Helix 66	AH3	C	47	56	Right-handed alpha
Helix 67	AH4	C	57	67	Right-handed alpha
Helix 68	AH5	C	81	90	Right-handed alpha
Helix 69	AH6	C	91	102	Right-handed alpha
Helix 70	AH7	C	103	108	Right-handed 310
Helix 71	AH8	C	119	128	Right-handed alpha
Helix 72	AH9	C	129	139	Right-handed alpha
Helix 73	AI1	C	165	174	Right-handed alpha
Helix 74	AI2	C	176	185	Right-handed alpha
Helix 75	AI3	C	193	197	Right-handed 310
Helix 76	AI4	C	198	205	Right-handed alpha
Helix 77	AI5	C	209	223	Right-handed alpha
Helix 78	AI6	C	231	235	Right-handed 310
Helix 79	AI7	C	242	251	Right-handed alpha
Helix 80	AI8	C	252	261	Right-handed alpha
Helix 81	AI9	C	280	285	Right-handed alpha
Helix 82	AJ1	C	291	298	Right-handed alpha
Helix 83	AJ2	C	301	309	Right-handed 310
Helix 84	AJ3	C	310	349	Right-handed alpha
Helix 85	AJ4	C	379	408	Right-handed alpha
Helix 86	AJ5	C	412	417	Right-handed alpha
Helix 87	AJ6	C	422	445	Right-handed alpha
Helix 88	AJ7	C	450	464	Right-handed alpha
Helix 89	AJ8	C	465	472	Right-handed 310
Helix 90	AJ9	C	477	511	Right-handed alpha
Helix 91	AK1	C	525	538	Right-handed alpha
Helix 92	AK2	C	552	567	Right-handed alpha
Helix 93	AK3	C	569	585	Right-handed alpha
Helix 94	AK4	C	587	608	Right-handed alpha
Helix 95	AK5	C	609	613	Right-handed 310
Helix 96	AK6	C	621	624	Right-handed 310
Helix 97	AK7	D	30	47	Right-handed alpha
Helix 98	AK8	D	47	56	Right-handed alpha
Helix 99	AK9	D	57	67	Right-handed alpha
Helix 100	AL1	D	81	90	Right-handed alpha
Helix 101	AL2	D	91	102	Right-handed alpha
Helix 102	AL3	D	103	108	Right-handed 310
Helix 103	AL4	D	119	128	Right-handed alpha
Helix 104	AL5	D	129	139	Right-handed alpha
Helix 105	AL6	D	165	174	Right-handed alpha
Helix 106	AL7	D	176	185	Right-handed alpha
Helix 107	AL8	D	193	197	Right-handed 310
Helix 108	AL9	D	198	205	Right-handed alpha
Helix 109	AM1	D	209	223	Right-handed alpha
Helix 110	AM2	D	231	235	Right-handed 310
Helix 111	AM3	D	242	251	Right-handed alpha
Helix 112	AM4	D	252	261	Right-handed alpha
Helix 113	AM5	D	280	285	Right-handed alpha
Helix 114	AM6	D	291	298	Right-handed alpha
Helix 115	AM7	D	301	309	Right-handed 310
Helix 116	AM8	D	310	349	Right-handed alpha
Helix 117	AM9	D	379	408	Right-handed alpha
Helix 118	AN1	D	412	417	Right-handed alpha
Helix 119	AN2	D	422	445	Right-handed alpha
Helix 120	AN3	D	450	464	Right-handed alpha
Helix 121	AN4	D	465	472	Right-handed 310
Helix 122	AN5	D	477	511	Right-handed alpha
Helix 123	AN6	D	525	538	Right-handed alpha
Helix 124	AN7	D	552	567	Right-handed alpha
Helix 125	AN8	D	569	585	Right-handed alpha
Helix 126	AN9	D	587	608	Right-handed alpha
Helix 127	AO1	D	609	613	Right-handed 310
Helix 128	AO2	D	621	624	Right-handed 310

There are 8 sheets in PDB entry 6DMR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	270	first strand
Strand 2	A	273	279	anti-parallel
Strand 3	A	629	636	anti-parallel
Strand 4	A	618	619	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	354	first strand
Strand 2	A	368	370	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	270	first strand
Strand 2	B	273	279	anti-parallel
Strand 3	B	629	636	anti-parallel
Strand 4	B	618	619	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	354	first strand
Strand 2	B	368	370	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	270	first strand
Strand 2	C	273	279	anti-parallel
Strand 3	C	629	636	anti-parallel
Strand 4	C	618	619	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	354	first strand
Strand 2	C	368	370	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	270	first strand
Strand 2	D	273	279	anti-parallel
Strand 3	D	629	636	anti-parallel
Strand 4	D	618	619	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	354	first strand
Strand 2	D	368	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DMR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DMR