Analysis of interatomic Contacts of Structural Units in PDB entry:
6DMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DMS entry

There is 1 chain in PDB entry 6DMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 30ILE 732
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 6DMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 43Right-handed 310
Helix 2
AA2
A
65 72Right-handed alpha
Helix 3
AA3
A
88 92Right-handed 310
Helix 4
AA4
A
99 105Right-handed alpha
Helix 5
AA5
A
128 140Right-handed alpha
Helix 6
AA6
A
167 177Right-handed alpha
Helix 7
AA7
A
179 187Right-handed alpha
Helix 8
AA8
A
189 193Right-handed 310
Helix 9
AA9
A
197 208Right-handed alpha
Helix 10
AB1
A
208 217Right-handed alpha
Helix 11
AB2
A
218 220Right-handed 310
Helix 12
AB3
A
227 233Right-handed alpha
Helix 13
AB4
A
244 247Right-handed 310
Helix 14
AB5
A
248 260Right-handed alpha
Helix 15
AB6
A
306 322Right-handed alpha
Helix 16
AB7
A
360 373Right-handed alpha
Helix 17
AB8
A
398 416Right-handed alpha
Helix 18
AB9
A
594 598Right-handed 310
Helix 19
AC1
A
700 704Right-handed 310
Back to top of page

There are 13 sheets in PDB entry 6DMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 269first strand
Strand 2
A
222 226parallel
Strand 3
A
143 149parallel
Strand 4
A
80 84parallel
Strand 5
A
46 49parallel
Strand 6
A
377 379parallel
Strand 7
A
341 342parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 386first strand
Strand 2
A
394 397anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
449 450anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 444first strand
Strand 2
A
479 484anti-parallel
Strand 3
A
471 476anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 464first strand
Strand 2
A
494 501anti-parallel
Strand 3
A
506 513anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
558 559anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 538first strand
Strand 2
A
613 623parallel
Strand 3
A
542 543parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 538first strand
Strand 2
A
613 623parallel
Strand 3
A
599 608anti-parallel
Strand 4
A
567 572anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 553first strand
Strand 2
A
586 590anti-parallel
Strand 3
A
578 581anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 638first strand
Strand 2
A
664 665anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
642 644first strand
Strand 2
A
719 729parallel
Strand 3
A
648 649parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
642 644first strand
Strand 2
A
719 729parallel
Strand 3
A
705 714anti-parallel
Strand 4
A
673 678anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
654 659first strand
Strand 2
A
692 697anti-parallel
Strand 3
A
684 687anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il