Analysis of interatomic Contacts of Structural Units in PDB entry:
6DMW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DMW entry

There are 5 chains in PDB entry 6DMW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 29	THR 709
E	THR 6	THR 147
B	TRP 29	ASP 638
C	TRP 29	ASP 638
D	TRP 29	GLN 639

There are145 helices in PDB entry 6DMW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	47	Right-handed alpha
Helix 2	AA2	A	47	56	Right-handed alpha
Helix 3	AA3	A	57	67	Right-handed alpha
Helix 4	AA4	A	81	90	Right-handed alpha
Helix 5	AA5	A	91	102	Right-handed alpha
Helix 6	AA6	A	103	108	Right-handed 310
Helix 7	AA7	A	119	127	Right-handed alpha
Helix 8	AA8	A	129	140	Right-handed alpha
Helix 9	AA9	A	165	174	Right-handed alpha
Helix 10	AB1	A	175	185	Right-handed alpha
Helix 11	AB2	A	193	197	Right-handed 310
Helix 12	AB3	A	198	205	Right-handed alpha
Helix 13	AB4	A	209	222	Right-handed alpha
Helix 14	AB5	A	231	235	Right-handed 310
Helix 15	AB6	A	242	251	Right-handed alpha
Helix 16	AB7	A	252	262	Right-handed alpha
Helix 17	AB8	A	280	285	Right-handed alpha
Helix 18	AB9	A	291	298	Right-handed alpha
Helix 19	AC1	A	302	310	Right-handed 310
Helix 20	AC2	A	312	324	Right-handed alpha
Helix 21	AC3	A	324	349	Right-handed alpha
Helix 22	AC4	A	372	377	Right-handed alpha
Helix 23	AC5	A	379	410	Right-handed alpha
Helix 24	AC6	A	411	416	Right-handed alpha
Helix 25	AC7	A	422	445	Right-handed alpha
Helix 26	AC8	A	450	464	Right-handed alpha
Helix 27	AC9	A	465	472	Right-handed 310
Helix 28	AD1	A	475	489	Right-handed alpha
Helix 29	AD2	A	489	513	Right-handed alpha
Helix 30	AD3	A	516	521	Right-handed alpha
Helix 31	AD4	A	525	538	Right-handed alpha
Helix 32	AD5	A	554	567	Right-handed alpha
Helix 33	AD6	A	569	586	Right-handed alpha
Helix 34	AD7	A	587	608	Right-handed alpha
Helix 35	AD8	A	609	613	Right-handed 310
Helix 36	AD9	A	640	652	Right-handed alpha
Helix 37	AE1	A	700	709	Right-handed alpha
Helix 38	AE2	E	7	21	Right-handed alpha
Helix 39	AE3	E	29	40	Right-handed alpha
Helix 40	AE4	E	66	75	Right-handed alpha
Helix 41	AE5	E	84	94	Right-handed alpha
Helix 42	AE6	E	102	114	Right-handed alpha
Helix 43	AE7	E	119	130	Right-handed alpha
Helix 44	AE8	E	138	147	Right-handed alpha
Helix 45	AE9	B	30	47	Right-handed alpha
Helix 46	AF1	B	47	56	Right-handed alpha
Helix 47	AF2	B	57	67	Right-handed alpha
Helix 48	AF3	B	81	90	Right-handed alpha
Helix 49	AF4	B	91	102	Right-handed alpha
Helix 50	AF5	B	119	127	Right-handed alpha
Helix 51	AF6	B	129	140	Right-handed alpha
Helix 52	AF7	B	165	174	Right-handed alpha
Helix 53	AF8	B	175	185	Right-handed alpha
Helix 54	AF9	B	193	197	Right-handed 310
Helix 55	AG1	B	198	205	Right-handed alpha
Helix 56	AG2	B	209	223	Right-handed alpha
Helix 57	AG3	B	242	251	Right-handed alpha
Helix 58	AG4	B	252	262	Right-handed alpha
Helix 59	AG5	B	280	285	Right-handed alpha
Helix 60	AG6	B	291	298	Right-handed alpha
Helix 61	AG7	B	303	308	Right-handed alpha
Helix 62	AG8	B	310	324	Right-handed alpha
Helix 63	AG9	B	324	349	Right-handed alpha
Helix 64	AH1	B	379	410	Right-handed alpha
Helix 65	AH2	B	411	418	Right-handed alpha
Helix 66	AH3	B	422	445	Right-handed alpha
Helix 67	AH4	B	450	464	Right-handed alpha
Helix 68	AH5	B	465	471	Right-handed 310
Helix 69	AH6	B	475	489	Right-handed alpha
Helix 70	AH7	B	489	513	Right-handed alpha
Helix 71	AH8	B	525	538	Right-handed alpha
Helix 72	AH9	B	552	567	Right-handed alpha
Helix 73	AI1	B	569	586	Right-handed alpha
Helix 74	AI2	B	587	608	Right-handed alpha
Helix 75	AI3	B	609	613	Right-handed 310
Helix 76	AI4	C	30	47	Right-handed alpha
Helix 77	AI5	C	47	56	Right-handed alpha
Helix 78	AI6	C	57	67	Right-handed alpha
Helix 79	AI7	C	81	89	Right-handed alpha
Helix 80	AI8	C	91	102	Right-handed alpha
Helix 81	AI9	C	103	108	Right-handed 310
Helix 82	AJ1	C	119	127	Right-handed alpha
Helix 83	AJ2	C	129	140	Right-handed alpha
Helix 84	AJ3	C	165	174	Right-handed alpha
Helix 85	AJ4	C	175	185	Right-handed alpha
Helix 86	AJ5	C	193	197	Right-handed 310
Helix 87	AJ6	C	198	205	Right-handed alpha
Helix 88	AJ7	C	209	223	Right-handed alpha
Helix 89	AJ8	C	231	235	Right-handed 310
Helix 90	AJ9	C	242	251	Right-handed alpha
Helix 91	AK1	C	252	261	Right-handed alpha
Helix 92	AK2	C	280	285	Right-handed alpha
Helix 93	AK3	C	291	298	Right-handed alpha
Helix 94	AK4	C	303	308	Right-handed alpha
Helix 95	AK5	C	310	324	Right-handed alpha
Helix 96	AK6	C	324	349	Right-handed alpha
Helix 97	AK7	C	372	377	Right-handed alpha
Helix 98	AK8	C	379	410	Right-handed alpha
Helix 99	AK9	C	411	418	Right-handed alpha
Helix 100	AL1	C	422	445	Right-handed alpha
Helix 101	AL2	C	450	464	Right-handed alpha
Helix 102	AL3	C	465	471	Right-handed 310
Helix 103	AL4	C	475	489	Right-handed alpha
Helix 104	AL5	C	489	512	Right-handed alpha
Helix 105	AL6	C	516	521	Right-handed alpha
Helix 106	AL7	C	525	538	Right-handed alpha
Helix 107	AL8	C	552	567	Right-handed alpha
Helix 108	AL9	C	570	586	Right-handed alpha
Helix 109	AM1	C	587	608	Right-handed alpha
Helix 110	AM2	C	609	613	Right-handed 310
Helix 111	AM3	D	30	47	Right-handed alpha
Helix 112	AM4	D	47	56	Right-handed alpha
Helix 113	AM5	D	57	67	Right-handed alpha
Helix 114	AM6	D	81	89	Right-handed alpha
Helix 115	AM7	D	91	102	Right-handed alpha
Helix 116	AM8	D	103	108	Right-handed 310
Helix 117	AM9	D	119	128	Right-handed alpha
Helix 118	AN1	D	129	140	Right-handed alpha
Helix 119	AN2	D	165	174	Right-handed alpha
Helix 120	AN3	D	175	185	Right-handed alpha
Helix 121	AN4	D	193	197	Right-handed 310
Helix 122	AN5	D	198	205	Right-handed alpha
Helix 123	AN6	D	209	223	Right-handed alpha
Helix 124	AN7	D	242	251	Right-handed alpha
Helix 125	AN8	D	252	263	Right-handed alpha
Helix 126	AN9	D	280	285	Right-handed alpha
Helix 127	AO1	D	291	298	Right-handed alpha
Helix 128	AO2	D	301	306	Right-handed alpha
Helix 129	AO3	D	307	309	Right-handed 310
Helix 130	AO4	D	310	324	Right-handed alpha
Helix 131	AO5	D	324	349	Right-handed alpha
Helix 132	AO6	D	372	377	Right-handed alpha
Helix 133	AO7	D	379	404	Right-handed alpha
Helix 134	AO8	D	404	410	Right-handed alpha
Helix 135	AO9	D	411	416	Right-handed alpha
Helix 136	AP1	D	422	445	Right-handed alpha
Helix 137	AP2	D	450	463	Right-handed alpha
Helix 138	AP3	D	464	471	Right-handed 310
Helix 139	AP4	D	475	489	Right-handed alpha
Helix 140	AP5	D	489	513	Right-handed alpha
Helix 141	AP6	D	516	521	Right-handed alpha
Helix 142	AP7	D	525	538	Right-handed alpha
Helix 143	AP8	D	554	586	Right-handed alpha
Helix 144	AP9	D	588	608	Right-handed alpha
Helix 145	AQ1	D	609	613	Right-handed 310

There are 8 sheets in PDB entry 6DMW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	270	first strand
Strand 2	A	273	279	anti-parallel
Strand 3	A	630	636	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	354	first strand
Strand 2	A	368	370	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	270	first strand
Strand 2	B	273	279	anti-parallel
Strand 3	B	629	636	anti-parallel
Strand 4	B	618	619	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	354	first strand
Strand 2	B	368	370	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	270	first strand
Strand 2	C	273	279	anti-parallel
Strand 3	C	630	636	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	353	first strand
Strand 2	C	369	370	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	270	first strand
Strand 2	D	273	279	anti-parallel
Strand 3	D	630	636	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	354	first strand
Strand 2	D	368	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DMW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DMW