Analysis of interatomic Contacts of Structural Units in PDB entry:
6DMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DMY entry

There are 2 chains in PDB entry 6DMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 73SER 1185
B
LEU 39ASN 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 6DMY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
74 96Right-handed alpha
Helix 2
AA2
A
97 115Right-handed alpha
Helix 3
AA3
A
136 144Right-handed alpha
Helix 4
AA4
A
171 185Right-handed alpha
Helix 5
AA5
A
198 203Right-handed alpha
Helix 6
AA6
A
214 223Right-handed alpha
Helix 7
AA7
A
230 234Right-handed 310
Helix 8
AA8
A
260 267Right-handed alpha
Helix 9
AA9
A
275 285Right-handed alpha
Helix 10
AB1
A
339 343Right-handed alpha
Helix 11
AB2
A
368 376Right-handed alpha
Helix 12
AB3
A
388 410Right-handed alpha
Helix 13
AB4
A
425 435Right-handed alpha
Helix 14
AB5
A
438 457Right-handed alpha
Helix 15
AB6
A
466 489Right-handed alpha
Helix 16
AB7
A
498 525Right-handed alpha
Helix 17
AB8
A
535 543Right-handed alpha
Helix 18
AB9
A
544 564Right-handed alpha
Helix 19
AC1
A
567 605Right-handed alpha
Helix 20
AC2
A
730 735Right-handed alpha
Helix 21
AC3
A
740 745Right-handed alpha
Helix 22
AC4
A
750 769Right-handed alpha
Helix 23
AC5
A
785 795Right-handed alpha
Helix 24
AC6
A
816 826Right-handed alpha
Helix 25
AC7
A
827 830Right-handed 310
Helix 26
AC8
A
843 863Right-handed alpha
Helix 27
AC9
A
881 889Right-handed alpha
Helix 28
AD1
A
898 904Right-handed 310
Helix 29
AD2
A
920 930Right-handed alpha
Helix 30
AD3
A
930 937Right-handed alpha
Helix 31
AD4
A
983 1002Right-handed alpha
Helix 32
AD5
A
1013 1018Right-handed alpha
Helix 33
AD6
A
1026 1046Right-handed alpha
Helix 34
AD7
A
1049 1075Right-handed alpha
Helix 35
AD8
A
1081 1107Right-handed alpha
Helix 36
AD9
A
1112 1122Right-handed alpha
Helix 37
AE1
A
1122 1141Right-handed alpha
Helix 38
AE2
A
1145 1152Right-handed alpha
Helix 39
AE3
A
1152 1178Right-handed alpha
Helix 40
AE4
B
70 74Right-handed 310
Helix 41
AE5
B
99 115Right-handed alpha
Helix 42
AE6
B
138 142Right-handed 310
Helix 43
AE7
B
157 167Right-handed alpha
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There are 4 sheets in PDB entry 6DMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
228 229first strand
Strand 2
A
360 364anti-parallel
Strand 3
A
156 161anti-parallel
Strand 4
A
418 422anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
326 328first strand
Strand 2
A
336 338anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
972 978first strand
Strand 2
A
801 808anti-parallel
Strand 3
A
1007 1012anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 48first strand
Strand 2
B
172 174anti-parallel
Strand 3
B
181 184anti-parallel
Strand 4
B
145 149anti-parallel
Strand 5
B
123 126anti-parallel
Strand 6
B
85 86parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il