Analysis of interatomic Contacts of Structural Units in PDB entry:
6DNB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DNB entry

There is 1 chain in PDB entry 6DNB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3GLN 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6DNB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 28Right-handed alpha
Helix 2
AA2
A
51 64Right-handed alpha
Helix 3
AA3
A
77 90Right-handed alpha
Helix 4
AA4
A
93 98Right-handed alpha
Helix 5
AA5
A
108 124Right-handed alpha
Helix 6
AA6
A
141 152Right-handed alpha
Helix 7
AA7
A
170 180Right-handed alpha
Helix 8
AA8
A
202 217Right-handed alpha
Helix 9
AA9
A
233 238Right-handed alpha
Helix 10
AB1
A
238 247Right-handed alpha
Helix 11
AB2
A
263 266Right-handed 310
Helix 12
AB3
A
277 295Right-handed alpha
Helix 13
AB4
A
301 312Right-handed alpha
Helix 14
AB5
A
313 345Right-handed alpha
Helix 15
AB6
A
352 357Right-handed alpha
Helix 16
AB7
A
367 377Right-handed alpha
Helix 17
AB8
A
391 393Right-handed 310
Helix 18
AB9
A
397 412Right-handed alpha
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There are 4 sheets in PDB entry 6DNB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
380 381parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 107first strand
Strand 2
A
268 274anti-parallel
Strand 3
A
251 256anti-parallel
Strand 4
A
219 224parallel
Strand 5
A
186 190parallel
Strand 6
A
134 138parallel
Strand 7
A
156 160parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
168 169anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 363first strand
Strand 2
A
387 389anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il