Analysis of interatomic Contacts of Structural Units in PDB entry:
6DNQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DNQ entry

There are 5 chains in PDB entry 6DNQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ALA 3GLY 56
C
 GLU 287GLN 312
D
 GLY 586LEU 672
A
 GLU 287GLY 311
B
 GLY 586LEU 672
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6DNQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
3 8Right-handed 310
Helix 2
AA2
E
12 54Right-handed alpha
Helix 3
AA3
C
290 304Right-handed alpha
Helix 4
AA4
C
304 309Right-handed alpha
Helix 5
AA5
D
590 595Right-handed 310
Helix 6
AA6
D
596 612Right-handed alpha
Helix 7
AA7
D
616 620Right-handed 310
Helix 8
AA8
D
622 643Right-handed alpha
Helix 9
AA9
D
645 670Right-handed alpha
Helix 10
AB1
A
290 304Right-handed alpha
Helix 11
AB2
A
305 306Right-handed 310
Helix 12
AB3
A
308 310Right-handed 310
Helix 13
AB4
B
590 595Right-handed 310
Helix 14
AB5
B
596 612Right-handed alpha
Helix 15
AB6
B
622 643Right-handed alpha
Helix 16
AB7
B
645 671Right-handed alpha
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There are no sheets in PDB entry 6DNQ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il