Analysis of interatomic Contacts of Structural Units in PDB entry:
6DNS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DNS entry

There is 1 chain in PDB entry 6DNS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 31VAL 622
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6DNS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 43Right-handed 310
Helix 2
AA2
A
65 72Right-handed alpha
Helix 3
AA3
A
88 92Right-handed 310
Helix 4
AA4
A
99 105Right-handed alpha
Helix 5
AA5
A
128 140Right-handed alpha
Helix 6
AA6
A
167 177Right-handed alpha
Helix 7
AA7
A
179 188Right-handed alpha
Helix 8
AA8
A
189 193Right-handed 310
Helix 9
AA9
A
197 208Right-handed alpha
Helix 10
AB1
A
208 217Right-handed alpha
Helix 11
AB2
A
218 220Right-handed 310
Helix 12
AB3
A
227 232Right-handed alpha
Helix 13
AB4
A
244 247Right-handed 310
Helix 14
AB5
A
248 262Right-handed alpha
Helix 15
AB6
A
305 322Right-handed alpha
Helix 16
AB7
A
360 373Right-handed alpha
Helix 17
AB8
A
398 416Right-handed alpha
Helix 18
AB9
A
594 598Right-handed 310
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There are 8 sheets in PDB entry 6DNS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 269first strand
Strand 2
A
222 226parallel
Strand 3
A
143 149parallel
Strand 4
A
80 84parallel
Strand 5
A
46 49parallel
Strand 6
A
377 379parallel
Strand 7
A
341 342parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 386first strand
Strand 2
A
394 397anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
449 450anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 444first strand
Strand 2
A
479 484anti-parallel
Strand 3
A
471 476anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 464first strand
Strand 2
A
494 501anti-parallel
Strand 3
A
506 513anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
558 559anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
548 553first strand
Strand 2
A
586 591anti-parallel
Strand 3
A
578 583anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 572first strand
Strand 2
A
600 608anti-parallel
Strand 3
A
613 621anti-parallel
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