Analysis of interatomic Contacts of Structural Units in PDB entry:
6DNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DNW entry

There are 3 chains in PDB entry 6DNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 134LEU 452
B
 G 1 G 26
C
 C 1 A 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6DNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
136 146Right-handed alpha
Helix 2
AA2
A
170 188Right-handed alpha
Helix 3
AA3
A
189 199Right-handed alpha
Helix 4
AA4
A
206 216Right-handed alpha
Helix 5
AA5
A
217 220Right-handed 310
Helix 6
AA6
A
240 256Right-handed alpha
Helix 7
AA7
A
303 307Right-handed alpha
Helix 8
AA8
A
321 334Right-handed alpha
Helix 9
AA9
A
425 436Right-handed alpha
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There are 4 sheets in PDB entry 6DNW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
166 169anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
A
229 232anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 274first strand
Strand 2
A
437 443parallel
Strand 3
A
446 451anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 290first strand
Strand 2
A
293 302anti-parallel
Strand 3
A
319 320anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il