Analysis of interatomic Contacts of Structural Units in PDB entry:
6DNZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DNZ entry

There are 3 chains in PDB entry 6DNZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 20	ARG 345
B	ARG 71	TYR 389
C	ASP 20	TYR 25

There are 51 helices in PDB entry 6DNZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	23	Right-handed 310
Helix 2	AA2	A	24	33	Right-handed alpha
Helix 3	AA3	A	34	47	Right-handed alpha
Helix 4	AA4	A	48	52	Right-handed 310
Helix 5	AA5	A	65	74	Right-handed alpha
Helix 6	AA6	A	86	98	Right-handed alpha
Helix 7	AA7	A	110	114	Right-handed 310
Helix 8	AA8	A	137	148	Right-handed alpha
Helix 9	AA9	A	169	177	Right-handed alpha
Helix 10	AB1	A	178	181	Right-handed 310
Helix 11	AB2	A	188	196	Right-handed alpha
Helix 12	AB3	A	205	209	Right-handed 310
Helix 13	AB4	A	225	230	Right-handed alpha
Helix 14	AB5	B	72	74	Right-handed 310
Helix 15	AB6	B	75	80	Right-handed alpha
Helix 16	AB7	B	81	92	Right-handed alpha
Helix 17	AB8	B	108	117	Right-handed alpha
Helix 18	AB9	B	129	140	Right-handed alpha
Helix 19	AC1	B	152	160	Right-handed 310
Helix 20	AC2	B	180	193	Right-handed alpha
Helix 21	AC3	B	214	222	Right-handed alpha
Helix 22	AC4	B	223	227	Right-handed 310
Helix 23	AC5	B	233	242	Right-handed alpha
Helix 24	AC6	B	250	254	Right-handed 310
Helix 25	AC7	B	311	315	Right-handed 310
Helix 26	AC8	C	20	23	Right-handed 310
Helix 27	AC9	C	24	33	Right-handed alpha
Helix 28	AD1	C	34	47	Right-handed alpha
Helix 29	AD2	C	48	52	Right-handed 310
Helix 30	AD3	C	65	74	Right-handed alpha
Helix 31	AD4	C	86	98	Right-handed alpha
Helix 32	AD5	C	110	114	Right-handed 310
Helix 33	AD6	C	137	148	Right-handed alpha
Helix 34	AD7	C	169	176	Right-handed alpha
Helix 35	AD8	C	177	181	Right-handed 310
Helix 36	AD9	C	188	196	Right-handed alpha
Helix 37	AE1	C	205	209	Right-handed 310
Helix 38	AE2	C	225	230	Right-handed alpha
Helix 39	AE3	D	72	74	Right-handed 310
Helix 40	AE4	D	75	81	Right-handed alpha
Helix 41	AE5	D	81	92	Right-handed alpha
Helix 42	AE6	D	108	117	Right-handed alpha
Helix 43	AE7	D	129	141	Right-handed alpha
Helix 44	AE8	D	152	157	Right-handed alpha
Helix 45	AE9	D	158	160	Right-handed 310
Helix 46	AF1	D	181	193	Right-handed alpha
Helix 47	AF2	D	214	222	Right-handed alpha
Helix 48	AF3	D	223	227	Right-handed 310
Helix 49	AF4	D	233	242	Right-handed alpha
Helix 50	AF5	D	250	254	Right-handed 310
Helix 51	AF6	D	311	315	Right-handed 310

There are 16 sheets in PDB entry 6DNZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	108	first strand
Strand 2	A	78	83	parallel
Strand 3	A	56	60	parallel
Strand 4	A	120	124	parallel
Strand 5	A	149	156	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	202	first strand
Strand 2	A	288	299	anti-parallel
Strand 3	A	253	266	anti-parallel
Strand 4	A	159	167	anti-parallel
Strand 5	A	214	220	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	202	first strand
Strand 2	A	288	299	anti-parallel
Strand 3	A	253	266	anti-parallel
Strand 4	A	273	276	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	238	first strand
Strand 2	A	304	313	anti-parallel
Strand 3	A	321	331	anti-parallel
Strand 4	A	334	344	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	150	first strand
Strand 2	B	121	126	parallel
Strand 3	B	99	103	parallel
Strand 4	B	165	170	parallel
Strand 5	B	194	201	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	331	341	anti-parallel
Strand 3	B	293	306	anti-parallel
Strand 4	B	204	212	anti-parallel
Strand 5	B	259	265	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	331	341	anti-parallel
Strand 3	B	293	306	anti-parallel
Strand 4	B	316	318	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	288	first strand
Strand 2	B	346	357	anti-parallel
Strand 3	B	362	370	anti-parallel
Strand 4	B	379	386	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	108	first strand
Strand 2	C	78	83	parallel
Strand 3	C	56	60	parallel
Strand 4	C	120	124	parallel
Strand 5	C	149	156	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	202	first strand
Strand 2	C	288	299	anti-parallel
Strand 3	C	253	266	anti-parallel
Strand 4	C	159	167	anti-parallel
Strand 5	C	214	220	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	202	first strand
Strand 2	C	288	299	anti-parallel
Strand 3	C	253	266	anti-parallel
Strand 4	C	273	276	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	238	first strand
Strand 2	C	304	313	anti-parallel
Strand 3	C	321	330	anti-parallel
Strand 4	C	335	344	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	150	first strand
Strand 2	D	121	126	parallel
Strand 3	D	99	103	parallel
Strand 4	D	165	169	parallel
Strand 5	D	194	201	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	246	first strand
Strand 2	D	331	341	anti-parallel
Strand 3	D	293	306	anti-parallel
Strand 4	D	204	212	anti-parallel
Strand 5	D	259	265	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	246	first strand
Strand 2	D	331	341	anti-parallel
Strand 3	D	293	306	anti-parallel
Strand 4	D	316	318	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	288	first strand
Strand 2	D	346	357	anti-parallel
Strand 3	D	362	370	anti-parallel
Strand 4	D	379	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DNZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DNZ