Analysis of interatomic Contacts of Structural Units in PDB entry:
6DO1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DO1 entry

There are 8 chains in PDB entry 6DO1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 9	LEU 416
B	ASP 9	LEU 416
C	GLN 1	SER 125
D	GLN 1	SER 126
E	GLN 5	VAL 122
F	SER 7	VAL 98
G	ARG 2	ILE 8
H	ARG 2	ILE 8

There are 30 helices in PDB entry 6DO1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	54	Right-handed alpha
Helix 2	AA2	A	61	90	Right-handed alpha
Helix 3	AA3	A	96	131	Right-handed alpha
Helix 4	AA4	A	132	140	Right-handed alpha
Helix 5	AA5	A	141	160	Right-handed alpha
Helix 6	AA6	A	160	167	Right-handed alpha
Helix 7	AA7	A	192	201	Right-handed alpha
Helix 8	AA8	A	204	231	Right-handed alpha
Helix 9	AA9	A	336	351	Right-handed alpha
Helix 10	AB1	A	352	368	Right-handed alpha
Helix 11	AB2	A	372	396	Right-handed alpha
Helix 12	AB3	A	396	403	Right-handed alpha
Helix 13	AB4	A	405	415	Right-handed alpha
Helix 14	AB5	B	25	54	Right-handed alpha
Helix 15	AB6	B	61	90	Right-handed alpha
Helix 16	AB7	B	96	131	Right-handed alpha
Helix 17	AB8	B	132	138	Right-handed alpha
Helix 18	AB9	B	141	160	Right-handed alpha
Helix 19	AC1	B	160	167	Right-handed alpha
Helix 20	AC2	B	192	202	Right-handed alpha
Helix 21	AC3	B	204	231	Right-handed alpha
Helix 22	AC4	B	336	368	Right-handed alpha
Helix 23	AC5	B	372	396	Right-handed alpha
Helix 24	AC6	B	396	403	Right-handed alpha
Helix 25	AC7	B	405	415	Right-handed alpha
Helix 26	AC8	C	61	64	Right-handed 310
Helix 27	AC9	C	86	90	Right-handed 310
Helix 28	AD1	D	61	64	Right-handed 310
Helix 29	AD2	D	86	90	Right-handed 310
Helix 30	AD3	F	61	64	Right-handed 310

There are 12 sheets in PDB entry 6DO1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	168	172	parallel
Strand 3	A	178	184	anti-parallel
Strand 4	H	2	4	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	168	172	parallel
Strand 3	B	178	184	anti-parallel
Strand 4	G	2	4	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	17	25	anti-parallel
Strand 3	C	77	83	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	120	124	parallel
Strand 3	C	91	98	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	45	52	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	120	124	parallel
Strand 3	C	91	98	anti-parallel
Strand 4	C	114	116	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	16	25	anti-parallel
Strand 3	D	77	85	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	120	125	parallel
Strand 3	D	91	98	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	120	125	parallel
Strand 3	D	91	98	anti-parallel
Strand 4	D	114	116	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	7	first strand
Strand 2	E	20	23	anti-parallel
Strand 3	E	77	80	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	51	first strand
Strand 2	E	33	37	anti-parallel
Strand 3	E	91	98	anti-parallel
Strand 4	E	120	122	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	77	82	anti-parallel
Strand 3	F	67	72	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	59	first strand
Strand 2	F	47	52	anti-parallel
Strand 3	F	33	37	anti-parallel
Strand 4	F	96	97	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DO1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DO1