Analysis of interatomic Contacts of Structural Units in PDB entry:
6DO4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DO4 entry

There are 4 chains in PDB entry 6DO4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	VAL 359
B	ALA 27	VAL 359
D	GLY 182	GLY 187
C	GLY 182	GLY 187

There are 4 helices in PDB entry 6DO4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	179	182	Right-handed 310
Helix 2	AA2	A	344	348	Right-handed 310
Helix 3	AA3	B	179	183	Right-handed 310
Helix 4	AA4	B	344	348	Right-handed 310

There are 16 sheets in PDB entry 6DO4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	43	47	anti-parallel
Strand 3	A	67	72	anti-parallel
Strand 4	A	78	82	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	131	134	parallel
Strand 3	A	113	122	anti-parallel
Strand 4	A	102	110	anti-parallel
Strand 5	A	95	99	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	156	165	anti-parallel
Strand 3	A	189	199	anti-parallel
Strand 4	A	175	177	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	153	first strand
Strand 2	A	156	165	anti-parallel
Strand 3	A	189	199	anti-parallel
Strand 4	A	205	206	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	226	first strand
Strand 2	A	229	233	anti-parallel
Strand 3	A	245	249	anti-parallel
Strand 4	A	255	258	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	240	241	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	275	first strand
Strand 2	A	280	287	anti-parallel
Strand 3	A	293	301	anti-parallel
Strand 4	A	306	309	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	326	first strand
Strand 2	A	331	335	anti-parallel
Strand 3	A	354	358	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	43	47	anti-parallel
Strand 3	B	67	72	anti-parallel
Strand 4	B	78	82	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	131	134	parallel
Strand 3	B	113	122	anti-parallel
Strand 4	B	102	110	anti-parallel
Strand 5	B	95	99	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	146	first strand
Strand 2	B	163	165	anti-parallel
Strand 3	B	189	192	anti-parallel
Strand 4	B	175	177	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	153	first strand
Strand 2	B	156	160	anti-parallel
Strand 3	B	195	199	anti-parallel
Strand 4	B	205	206	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	226	first strand
Strand 2	B	229	233	anti-parallel
Strand 3	B	245	249	anti-parallel
Strand 4	B	255	258	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	240	241	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	275	first strand
Strand 2	B	280	284	anti-parallel
Strand 3	B	297	301	anti-parallel
Strand 4	B	306	310	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	326	first strand
Strand 2	B	331	335	anti-parallel
Strand 3	B	354	358	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DO4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DO4