Analysis of interatomic Contacts of Structural Units in PDB entry:
6DPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DPR entry

There are 2 chains in PDB entry 6DPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 12LYS 401
B
 LYS 13GLY 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6DPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 45Right-handed alpha
Helix 2
AA2
A
45 53Right-handed alpha
Helix 3
AA3
A
53 61Right-handed alpha
Helix 4
AA4
A
72 93Right-handed alpha
Helix 5
AA5
A
104 118Right-handed alpha
Helix 6
AA6
A
125 130Right-handed alpha
Helix 7
AA7
A
159 179Right-handed alpha
Helix 8
AA8
A
180 190Right-handed alpha
Helix 9
AA9
A
192 221Right-handed alpha
Helix 10
AB1
A
222 229Right-handed alpha
Helix 11
AB2
A
230 234Right-handed 310
Helix 12
AB3
A
268 277Right-handed alpha
Helix 13
AB4
A
286 295Right-handed alpha
Helix 14
AB5
A
296 299Right-handed 310
Helix 15
AB6
A
300 313Right-handed alpha
Helix 16
AB7
A
315 323Right-handed alpha
Helix 17
AB8
A
325 354Right-handed alpha
Helix 18
AB9
A
354 360Right-handed alpha
Helix 19
AC1
A
383 397Right-handed alpha
Helix 20
AC2
B
33 35Right-handed 310
Helix 21
AC3
B
36 45Right-handed alpha
Helix 22
AC4
B
45 53Right-handed alpha
Helix 23
AC5
B
54 61Right-handed alpha
Helix 24
AC6
B
72 93Right-handed alpha
Helix 25
AC7
B
104 119Right-handed alpha
Helix 26
AC8
B
125 130Right-handed alpha
Helix 27
AC9
B
144 146Right-handed 310
Helix 28
AD1
B
159 179Right-handed alpha
Helix 29
AD2
B
180 191Right-handed alpha
Helix 30
AD3
B
192 215Right-handed alpha
Helix 31
AD4
B
216 221Right-handed alpha
Helix 32
AD5
B
222 229Right-handed alpha
Helix 33
AD6
B
229 235Right-handed alpha
Helix 34
AD7
B
263 266Right-handed 310
Helix 35
AD8
B
267 277Right-handed alpha
Helix 36
AD9
B
287 297Right-handed alpha
Helix 37
AE1
B
300 313Right-handed alpha
Helix 38
AE2
B
315 323Right-handed alpha
Helix 39
AE3
B
325 353Right-handed alpha
Helix 40
AE4
B
387 398Right-handed alpha
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There are 3 sheets in PDB entry 6DPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
148 149anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
248 249parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
148 149anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il