Analysis of interatomic Contacts of Structural Units in PDB entry:
6DPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DPS entry

There are 6 chains in PDB entry 6DPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3THR 124
B
 ASP 3THR 124
C
 ASN 2THR 124
D
 ALA 1THR 124
E
 ASP 3GLN 123
F
 ASP 3PRO 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6DPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed alpha
Helix 2
AA2
A
37 39Right-handed 310
Helix 3
AA3
B
6 10Right-handed alpha
Helix 4
AA4
B
37 39Right-handed 310
Helix 5
AA5
C
6 10Right-handed alpha
Helix 6
AA6
C
37 39Right-handed 310
Helix 7
AA7
D
6 10Right-handed alpha
Helix 8
AA8
D
37 39Right-handed 310
Helix 9
AA9
E
6 10Right-handed alpha
Helix 10
AB1
E
37 39Right-handed 310
Helix 11
AB2
F
6 10Right-handed alpha
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There are 18 sheets in PDB entry 6DPS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
74 80anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
11 17anti-parallel
Strand 5
A
118 120anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
66 71anti-parallel
Strand 3
A
32 35anti-parallel
Strand 4
A
97 99anti-parallel
Strand 5
A
103 104anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
89 95anti-parallel
Strand 3
A
108 114anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
74 80anti-parallel
Strand 3
B
21 28anti-parallel
Strand 4
B
11 17anti-parallel
Strand 5
B
118 120anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
66 71anti-parallel
Strand 3
B
32 35anti-parallel
Strand 4
B
97 99anti-parallel
Strand 5
B
103 104anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
89 95anti-parallel
Strand 3
B
108 114anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 54first strand
Strand 2
C
74 80anti-parallel
Strand 3
C
21 28anti-parallel
Strand 4
C
11 17anti-parallel
Strand 5
C
118 120anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 61first strand
Strand 2
C
67 71anti-parallel
Strand 3
C
32 35anti-parallel
Strand 4
C
97 99anti-parallel
Strand 5
C
103 104anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 44first strand
Strand 2
C
89 95anti-parallel
Strand 3
C
108 114anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 54first strand
Strand 2
D
74 80anti-parallel
Strand 3
D
21 28anti-parallel
Strand 4
D
11 17anti-parallel
Strand 5
D
118 120anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 61first strand
Strand 2
D
67 71anti-parallel
Strand 3
D
32 35anti-parallel
Strand 4
D
97 99anti-parallel
Strand 5
D
103 104anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
40 44first strand
Strand 2
D
89 95anti-parallel
Strand 3
D
108 114anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
53 54first strand
Strand 2
E
74 80anti-parallel
Strand 3
E
21 28anti-parallel
Strand 4
E
11 17anti-parallel
Strand 5
E
118 120anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 60first strand
Strand 2
E
68 71anti-parallel
Strand 3
E
32 35anti-parallel
Strand 4
E
97 99anti-parallel
Strand 5
E
103 104anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
40 43first strand
Strand 2
E
89 95anti-parallel
Strand 3
E
108 114anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
53 54first strand
Strand 2
F
74 80anti-parallel
Strand 3
F
21 28anti-parallel
Strand 4
F
11 17anti-parallel
Strand 5
F
118 120anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
58 62first strand
Strand 2
F
66 71anti-parallel
Strand 3
F
32 35anti-parallel
Strand 4
F
97 99anti-parallel
Strand 5
F
103 104anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
40 43first strand
Strand 2
F
89 95anti-parallel
Strand 3
F
108 114anti-parallel
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