Analysis of interatomic Contacts of Structural Units in PDB entry:
6DQ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DQ3 entry

There are 2 chains in PDB entry 6DQ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 94PRO 320
B
 THR 95PRO 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6DQ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
113 117Right-handed 310
Helix 2
AA2
A
123 137Right-handed alpha
Helix 3
AA3
A
143 154Right-handed alpha
Helix 4
AA4
A
170 176Right-handed alpha
Helix 5
AA5
A
176 184Right-handed alpha
Helix 6
AA6
A
193 199Right-handed alpha
Helix 7
AA7
A
206 215Right-handed alpha
Helix 8
AA8
A
229 233Right-handed 310
Helix 9
AA9
A
234 253Right-handed alpha
Helix 10
AB1
A
263 266Right-handed 310
Helix 11
AB2
A
268 278Right-handed alpha
Helix 12
AB3
A
294 296Right-handed 310
Helix 13
AB4
A
310 319Right-handed alpha
Helix 14
AB5
B
113 117Right-handed 310
Helix 15
AB6
B
123 137Right-handed alpha
Helix 16
AB7
B
143 154Right-handed alpha
Helix 17
AB8
B
170 176Right-handed alpha
Helix 18
AB9
B
176 184Right-handed alpha
Helix 19
AC1
B
193 199Right-handed alpha
Helix 20
AC2
B
206 215Right-handed alpha
Helix 21
AC3
B
229 233Right-handed 310
Helix 22
AC4
B
234 253Right-handed alpha
Helix 23
AC5
B
263 266Right-handed 310
Helix 24
AC6
B
268 278Right-handed alpha
Helix 25
AC7
B
294 296Right-handed 310
Helix 26
AC8
B
310 318Right-handed alpha
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There are 4 sheets in PDB entry 6DQ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
291 292anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
161 167parallel
Strand 3
A
188 192parallel
Strand 4
A
218 222parallel
Strand 5
A
259 261parallel
Strand 6
A
282 288parallel
Strand 7
A
300 304parallel
Strand 8
A
101 104parallel
Strand 9
A
161 167parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
291 292anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 141first strand
Strand 2
B
161 167parallel
Strand 3
B
188 192parallel
Strand 4
B
218 222parallel
Strand 5
B
259 261parallel
Strand 6
B
282 288parallel
Strand 7
B
300 304parallel
Strand 8
B
101 104parallel
Strand 9
B
161 167parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il