Analysis of interatomic Contacts of Structural Units in PDB entry:
6DQO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DQO entry

There is 1 chain in PDB entry 6DQO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0HIS 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6DQO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
39 41Right-handed 310
Helix 3
AA3
A
42 48Right-handed alpha
Helix 4
AA4
A
53 66Right-handed alpha
Helix 5
AA5
A
81 89Right-handed alpha
Helix 6
AA6
A
109 127Right-handed alpha
Helix 7
AA7
A
153 172Right-handed alpha
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There are 3 sheets in PDB entry 6DQO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
1 6parallel
Strand 3
A
68 74parallel
Strand 4
A
100 107parallel
Strand 5
A
131 132parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
1 6parallel
Strand 3
A
68 74parallel
Strand 4
A
100 107parallel
Strand 5
A
136 139parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
151 152anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il