Analysis of interatomic Contacts of Structural Units in PDB entry:
6DQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DQQ entry

There are 2 chains in PDB entry 6DQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 21HIS 541
B
 ALA 1ALA 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 6DQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 64Right-handed alpha
Helix 2
AA2
A
110 123Right-handed alpha
Helix 3
AA3
A
124 127Right-handed 310
Helix 4
AA4
A
132 137Right-handed alpha
Helix 5
AA5
A
141 147Right-handed alpha
Helix 6
AA6
A
151 155Right-handed 310
Helix 7
AA7
A
175 180Right-handed alpha
Helix 8
AA8
A
181 186Right-handed 310
Helix 9
AA9
A
189 197Right-handed alpha
Helix 10
AB1
A
198 202Right-handed 310
Helix 11
AB2
A
233 237Right-handed 310
Helix 12
AB3
A
249 259Right-handed alpha
Helix 13
AB4
A
273 281Right-handed alpha
Helix 14
AB5
A
307 318Right-handed alpha
Helix 15
AB6
A
319 326Right-handed alpha
Helix 16
AB7
A
352 357Right-handed 310
Helix 17
AB8
A
358 373Right-handed alpha
Helix 18
AB9
A
390 408Right-handed alpha
Helix 19
AC1
A
420 431Right-handed alpha
Helix 20
AC2
A
447 452Right-handed alpha
Helix 21
AC3
A
453 455Right-handed 310
Helix 22
AC4
A
467 477Right-handed alpha
Helix 23
AC5
A
478 480Right-handed 310
Helix 24
AC6
A
482 500Right-handed alpha
Helix 25
AC7
A
532 536Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 6DQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
241 245parallel
Strand 3
A
222 227anti-parallel
Strand 4
A
212 218anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
76 78anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 86first strand
Strand 2
A
92 97anti-parallel
Strand 3
A
164 168anti-parallel
Strand 4
A
157 161anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
503 514anti-parallel
Strand 3
A
285 298anti-parallel
Strand 4
A
435 441anti-parallel
Strand 5
A
381 388parallel
Strand 6
A
412 419parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 520first strand
Strand 2
A
537 538anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il