Analysis of interatomic Contacts of Structural Units in PDB entry:
6DQU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DQU entry

There are 2 chains in PDB entry 6DQU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 27HIS 541
B
 GLY 1LEU 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6DQU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 64Right-handed alpha
Helix 2
AA2
A
110 123Right-handed alpha
Helix 3
AA3
A
124 127Right-handed 310
Helix 4
AA4
A
132 137Right-handed alpha
Helix 5
AA5
A
141 147Right-handed alpha
Helix 6
AA6
A
151 155Right-handed 310
Helix 7
AA7
A
175 180Right-handed alpha
Helix 8
AA8
A
181 186Right-handed 310
Helix 9
AA9
A
189 197Right-handed alpha
Helix 10
AB1
A
198 202Right-handed 310
Helix 11
AB2
A
233 237Right-handed 310
Helix 12
AB3
A
249 259Right-handed alpha
Helix 13
AB4
A
270 272Right-handed 310
Helix 14
AB5
A
273 281Right-handed alpha
Helix 15
AB6
A
307 318Right-handed alpha
Helix 16
AB7
A
319 326Right-handed alpha
Helix 17
AB8
A
352 357Right-handed 310
Helix 18
AB9
A
358 373Right-handed alpha
Helix 19
AC1
A
390 408Right-handed alpha
Helix 20
AC2
A
420 431Right-handed alpha
Helix 21
AC3
A
447 452Right-handed alpha
Helix 22
AC4
A
453 455Right-handed 310
Helix 23
AC5
A
467 478Right-handed alpha
Helix 24
AC6
A
482 500Right-handed alpha
Helix 25
AC7
A
532 536Right-handed 310
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There are 6 sheets in PDB entry 6DQU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
537 540anti-parallel
Strand 3
A
519 520anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
241 245parallel
Strand 3
A
222 227anti-parallel
Strand 4
A
212 218anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
76 78anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 86first strand
Strand 2
A
92 97anti-parallel
Strand 3
A
164 168anti-parallel
Strand 4
A
157 161anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
513 514anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
503 510anti-parallel
Strand 3
A
289 298anti-parallel
Strand 4
A
435 441anti-parallel
Strand 5
A
381 388parallel
Strand 6
A
412 419parallel
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