Analysis of interatomic Contacts of Structural Units in PDB entry:
6DQW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DQW entry

There are 3 chains in PDB entry 6DQW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 19	GLN 547
B	THR 19	SER 546
C	LYS 20	CYS 281

There are 94 helices in PDB entry 6DQW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	33	Right-handed alpha
Helix 2	AA2	A	42	59	Right-handed alpha
Helix 3	AA3	A	60	62	Right-handed 310
Helix 4	AA4	A	63	73	Right-handed alpha
Helix 5	AA5	A	79	86	Right-handed alpha
Helix 6	AA6	A	104	121	Right-handed alpha
Helix 7	AA7	A	147	160	Right-handed alpha
Helix 8	AA8	A	182	187	Right-handed alpha
Helix 9	AA9	A	206	215	Right-handed alpha
Helix 10	AB1	A	217	235	Right-handed alpha
Helix 11	AB2	A	241	248	Right-handed alpha
Helix 12	AB3	A	250	256	Right-handed alpha
Helix 13	AB4	A	290	295	Right-handed alpha
Helix 14	AB5	A	298	319	Right-handed alpha
Helix 15	AB6	A	324	335	Right-handed alpha
Helix 16	AB7	A	343	351	Right-handed alpha
Helix 17	AB8	A	357	387	Right-handed alpha
Helix 18	AB9	A	389	393	Right-handed 310
Helix 19	AC1	A	408	415	Right-handed alpha
Helix 20	AC2	A	443	452	Right-handed alpha
Helix 21	AC3	A	457	467	Right-handed alpha
Helix 22	AC4	A	478	485	Right-handed alpha
Helix 23	AC5	A	487	491	Right-handed 310
Helix 24	AC6	A	492	505	Right-handed alpha
Helix 25	AC7	A	522	536	Right-handed alpha
Helix 26	AC8	B	25	33	Right-handed alpha
Helix 27	AC9	B	42	58	Right-handed alpha
Helix 28	AD1	B	60	62	Right-handed 310
Helix 29	AD2	B	63	73	Right-handed alpha
Helix 30	AD3	B	79	86	Right-handed alpha
Helix 31	AD4	B	104	121	Right-handed alpha
Helix 32	AD5	B	147	162	Right-handed alpha
Helix 33	AD6	B	182	188	Right-handed alpha
Helix 34	AD7	B	206	215	Right-handed alpha
Helix 35	AD8	B	217	235	Right-handed alpha
Helix 36	AD9	B	241	248	Right-handed alpha
Helix 37	AE1	B	250	256	Right-handed alpha
Helix 38	AE2	B	290	295	Right-handed alpha
Helix 39	AE3	B	298	319	Right-handed alpha
Helix 40	AE4	B	324	335	Right-handed alpha
Helix 41	AE5	B	343	351	Right-handed alpha
Helix 42	AE6	B	357	387	Right-handed alpha
Helix 43	AE7	B	389	393	Right-handed 310
Helix 44	AE8	B	408	415	Right-handed alpha
Helix 45	AE9	B	443	454	Right-handed alpha
Helix 46	AF1	B	457	467	Right-handed alpha
Helix 47	AF2	B	478	485	Right-handed alpha
Helix 48	AF3	B	492	505	Right-handed alpha
Helix 49	AF4	B	522	536	Right-handed alpha
Helix 50	AF5	C	25	33	Right-handed alpha
Helix 51	AF6	C	42	58	Right-handed alpha
Helix 52	AF7	C	60	62	Right-handed 310
Helix 53	AF8	C	63	73	Right-handed alpha
Helix 54	AF9	C	79	86	Right-handed alpha
Helix 55	AG1	C	104	121	Right-handed alpha
Helix 56	AG2	C	147	162	Right-handed alpha
Helix 57	AG3	C	182	188	Right-handed alpha
Helix 58	AG4	C	206	215	Right-handed alpha
Helix 59	AG5	C	217	234	Right-handed alpha
Helix 60	AG6	C	241	248	Right-handed alpha
Helix 61	AG7	C	250	256	Right-handed alpha
Helix 62	AG8	C	290	295	Right-handed alpha
Helix 63	AG9	C	298	318	Right-handed alpha
Helix 64	AH1	C	324	335	Right-handed alpha
Helix 65	AH2	C	343	351	Right-handed alpha
Helix 66	AH3	C	357	387	Right-handed alpha
Helix 67	AH4	C	389	393	Right-handed 310
Helix 68	AH5	C	408	415	Right-handed alpha
Helix 69	AH6	C	443	454	Right-handed alpha
Helix 70	AH7	C	457	467	Right-handed alpha
Helix 71	AH8	C	478	485	Right-handed alpha
Helix 72	AH9	C	487	491	Right-handed 310
Helix 73	AI1	C	492	505	Right-handed alpha
Helix 74	AI2	C	522	536	Right-handed alpha
Helix 75	AI3	D	43	58	Right-handed alpha
Helix 76	AI4	D	59	62	Right-handed 310
Helix 77	AI5	D	63	73	Right-handed alpha
Helix 78	AI6	D	79	86	Right-handed alpha
Helix 79	AI7	D	104	121	Right-handed alpha
Helix 80	AI8	D	148	162	Right-handed alpha
Helix 81	AI9	D	182	188	Right-handed alpha
Helix 82	AJ1	D	206	213	Right-handed alpha
Helix 83	AJ2	D	220	235	Right-handed alpha
Helix 84	AJ3	D	241	247	Right-handed alpha
Helix 85	AJ4	D	250	256	Right-handed alpha
Helix 86	AJ5	D	289	291	Right-handed 310
Helix 87	AJ6	D	300	318	Right-handed alpha
Helix 88	AJ7	D	324	335	Right-handed alpha
Helix 89	AJ8	D	343	349	Right-handed alpha
Helix 90	AJ9	D	368	387	Right-handed alpha
Helix 91	AK1	D	389	393	Right-handed 310
Helix 92	AK2	D	408	414	Right-handed alpha
Helix 93	AK3	D	492	504	Right-handed alpha
Helix 94	AK4	D	522	536	Right-handed alpha

There are 13 sheets in PDB entry 6DQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	282	287	anti-parallel
Strand 3	A	337	342	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	125	128	parallel
Strand 3	A	172	177	parallel
Strand 4	A	200	204	parallel
Strand 5	A	238	240	parallel
Strand 6	A	540	541	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	516	first strand
Strand 2	A	544	545	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	282	287	anti-parallel
Strand 3	B	337	342	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	125	128	parallel
Strand 3	B	172	177	parallel
Strand 4	B	199	204	parallel
Strand 5	B	238	240	parallel
Strand 6	B	540	541	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	516	first strand
Strand 2	B	544	545	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	280	287	anti-parallel
Strand 3	C	96	97	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	280	287	anti-parallel
Strand 3	C	337	342	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	125	128	parallel
Strand 3	C	172	177	parallel
Strand 4	C	200	204	parallel
Strand 5	C	238	240	parallel
Strand 6	C	540	541	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	515	516	first strand
Strand 2	C	544	545	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	280	287	anti-parallel
Strand 3	D	96	97	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	280	287	anti-parallel
Strand 3	D	337	342	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	125	128	parallel
Strand 3	D	172	176	parallel
Strand 4	D	200	204	parallel
Strand 5	D	238	240	parallel
Strand 6	D	540	541	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DQW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DQW