Analysis of interatomic Contacts of Structural Units in PDB entry:
6DQX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DQX entry

There is 1 chain in PDB entry 6DQX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6SER 551
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6DQX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 25Right-handed alpha
Helix 2
AA2
A
31 48Right-handed alpha
Helix 3
AA3
A
51 63Right-handed alpha
Helix 4
AA4
A
68 75Right-handed alpha
Helix 5
AA5
A
93 111Right-handed alpha
Helix 6
AA6
A
135 151Right-handed alpha
Helix 7
AA7
A
171 176Right-handed alpha
Helix 8
AA8
A
195 204Right-handed alpha
Helix 9
AA9
A
206 224Right-handed alpha
Helix 10
AB1
A
230 237Right-handed alpha
Helix 11
AB2
A
239 245Right-handed alpha
Helix 12
AB3
A
279 284Right-handed alpha
Helix 13
AB4
A
287 308Right-handed alpha
Helix 14
AB5
A
313 324Right-handed alpha
Helix 15
AB6
A
332 340Right-handed alpha
Helix 16
AB7
A
346 376Right-handed alpha
Helix 17
AB8
A
378 382Right-handed 310
Helix 18
AB9
A
397 404Right-handed alpha
Helix 19
AC1
A
432 442Right-handed alpha
Helix 20
AC2
A
446 456Right-handed alpha
Helix 21
AC3
A
467 474Right-handed alpha
Helix 22
AC4
A
476 480Right-handed 310
Helix 23
AC5
A
481 494Right-handed alpha
Helix 24
AC6
A
511 525Right-handed alpha
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There are 3 sheets in PDB entry 6DQX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
272 276anti-parallel
Strand 3
A
327 331parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 270first strand
Strand 2
A
85 89anti-parallel
Strand 3
A
114 117parallel
Strand 4
A
161 166parallel
Strand 5
A
189 193parallel
Strand 6
A
227 229parallel
Strand 7
A
529 530anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 505first strand
Strand 2
A
533 534parallel
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