Analysis of interatomic Contacts of Structural Units in PDB entry:
6DRD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DRD entry

There are 13 chains in PDB entry 6DRD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 364	MET 1484
B	GLU 16	ILE 1059
C	PRO 2	VAL 271
D	GLU 14	GLN 141
E	GLU 6	GLN 210
F	ARG 51	THR 126
G	MET 1	VAL 171
H	GLY 3	LEU 148
I	VAL 12	GLU 125
J	MET 1	PRO 64
K	ASN 2	LYS 112
L	MET 15	ARG 58
M	UNK 58	GLN 316

There are112 helices in PDB entry 6DRD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	397	400	Right-handed 310
Helix 2	AA2	A	401	409	Right-handed alpha
Helix 3	AA3	A	434	438	Right-handed 310
Helix 4	AA4	A	512	517	Right-handed alpha
Helix 5	AA5	A	538	549	Right-handed alpha
Helix 6	AA6	A	559	564	Right-handed alpha
Helix 7	AA7	A	588	596	Right-handed alpha
Helix 8	AA8	A	610	615	Right-handed 310
Helix 9	AA9	A	651	656	Right-handed alpha
Helix 10	AB1	A	662	676	Right-handed alpha
Helix 11	AB2	A	679	684	Right-handed alpha
Helix 12	AB3	A	688	693	Right-handed 310
Helix 13	AB4	A	695	700	Right-handed alpha
Helix 14	AB5	A	700	710	Right-handed alpha
Helix 15	AB6	A	710	721	Right-handed alpha
Helix 16	AB7	A	734	742	Right-handed alpha
Helix 17	AB8	A	747	760	Right-handed alpha
Helix 18	AB9	A	766	770	Right-handed 310
Helix 19	AC1	A	781	786	Right-handed alpha
Helix 20	AC2	A	834	853	Right-handed alpha
Helix 21	AC3	A	856	868	Right-handed alpha
Helix 22	AC4	A	890	894	Right-handed 310
Helix 23	AC5	A	912	920	Right-handed alpha
Helix 24	AC6	A	928	934	Right-handed alpha
Helix 25	AC7	A	940	945	Right-handed alpha
Helix 26	AC8	A	945	950	Right-handed alpha
Helix 27	AC9	A	951	970	Right-handed alpha
Helix 28	AD1	A	984	991	Right-handed alpha
Helix 29	AD2	A	1005	1018	Right-handed alpha
Helix 30	AD3	A	1027	1036	Right-handed alpha
Helix 31	AD4	A	1039	1048	Right-handed alpha
Helix 32	AD5	A	1061	1080	Right-handed alpha
Helix 33	AD6	A	1086	1093	Right-handed alpha
Helix 34	AD7	A	1120	1125	Right-handed alpha
Helix 35	AD8	A	1145	1150	Right-handed 310
Helix 36	AD9	A	1154	1159	Right-handed alpha
Helix 37	AE1	A	1180	1184	Right-handed 310
Helix 38	AE2	A	1189	1199	Right-handed alpha
Helix 39	AE3	A	1218	1223	Right-handed alpha
Helix 40	AE4	A	1227	1240	Right-handed alpha
Helix 41	AE5	A	1280	1293	Right-handed alpha
Helix 42	AE6	A	1342	1349	Right-handed alpha
Helix 43	AE7	A	1361	1367	Right-handed alpha
Helix 44	AE8	A	1378	1383	Right-handed alpha
Helix 45	AE9	A	1386	1390	Right-handed 310
Helix 46	AF1	A	1394	1398	Right-handed 310
Helix 47	AF2	A	1401	1406	Right-handed alpha
Helix 48	AF3	A	1476	1482	Right-handed alpha
Helix 49	AF4	B	21	30	Right-handed alpha
Helix 50	AF5	B	30	37	Right-handed alpha
Helix 51	AF6	B	40	44	Right-handed 310
Helix 52	AF7	B	45	51	Right-handed alpha
Helix 53	AF8	B	56	62	Right-handed alpha
Helix 54	AF9	B	109	116	Right-handed alpha
Helix 55	AG1	B	167	172	Right-handed alpha
Helix 56	AG2	B	245	249	Right-handed 310
Helix 57	AG3	B	268	275	Right-handed alpha
Helix 58	AG4	B	294	306	Right-handed alpha
Helix 59	AG5	B	313	323	Right-handed alpha
Helix 60	AG6	B	331	346	Right-handed alpha
Helix 61	AG7	B	357	377	Right-handed alpha
Helix 62	AG8	B	387	389	Right-handed 310
Helix 63	AG9	B	395	421	Right-handed alpha
Helix 64	AH1	B	439	447	Right-handed alpha
Helix 65	AH2	B	475	481	Right-handed alpha
Helix 66	AH3	B	502	506	Right-handed 310
Helix 67	AH4	B	538	546	Right-handed alpha
Helix 68	AH5	B	552	556	Right-handed 310
Helix 69	AH6	B	579	592	Right-handed alpha
Helix 70	AH7	B	636	644	Right-handed alpha
Helix 71	AH8	B	669	673	Right-handed 310
Helix 72	AH9	B	719	729	Right-handed alpha
Helix 73	AI1	B	798	802	Right-handed alpha
Helix 74	AI2	B	897	900	Right-handed 310
Helix 75	AI3	B	979	990	Right-handed alpha
Helix 76	AI4	B	1011	1016	Right-handed alpha
Helix 77	AI5	C	27	39	Right-handed alpha
Helix 78	AI6	C	60	71	Right-handed alpha
Helix 79	AI7	C	118	120	Right-handed 310
Helix 80	AI8	C	173	177	Right-handed 310
Helix 81	AI9	C	242	250	Right-handed alpha
Helix 82	AJ1	C	252	257	Right-handed alpha
Helix 83	AJ2	C	259	268	Right-handed alpha
Helix 84	AJ3	C	269	271	Right-handed 310
Helix 85	AJ4	D	37	50	Right-handed alpha
Helix 86	AJ5	D	58	71	Right-handed alpha
Helix 87	AJ6	D	76	89	Right-handed alpha
Helix 88	AJ7	D	93	102	Right-handed alpha
Helix 89	AJ8	D	107	115	Right-handed alpha
Helix 90	AJ9	D	123	135	Right-handed alpha
Helix 91	AK1	E	7	24	Right-handed alpha
Helix 92	AK2	E	83	97	Right-handed alpha
Helix 93	AK3	E	113	115	Right-handed 310
Helix 94	AK4	E	116	121	Right-handed alpha
Helix 95	AK5	E	152	163	Right-handed alpha
Helix 96	AK6	E	179	184	Right-handed alpha
Helix 97	AK7	F	60	75	Right-handed alpha
Helix 98	AK8	F	90	99	Right-handed alpha
Helix 99	AK9	G	24	34	Right-handed alpha
Helix 100	AL1	I	63	67	Right-handed 310
Helix 101	AL2	J	18	23	Right-handed alpha
Helix 102	AL3	J	30	35	Right-handed alpha
Helix 103	AL4	J	36	39	Right-handed 310
Helix 104	AL5	J	42	47	Right-handed alpha
Helix 105	AL6	J	55	60	Right-handed alpha
Helix 106	AL7	K	5	10	Right-handed 310
Helix 107	AL8	K	39	53	Right-handed alpha
Helix 108	AL9	K	82	90	Right-handed alpha
Helix 109	AM1	K	90	106	Right-handed alpha
Helix 110	AM2	M	59	63	Right-handed alpha
Helix 111	AM3	M	79	84	Right-handed alpha
Helix 112	AM4	M	305	311	Right-handed alpha

There are 41 sheets in PDB entry 6DRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	369	first strand
Strand 2	A	482	484	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	379	first strand
Strand 2	A	474	475	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	393	first strand
Strand 2	A	445	448	anti-parallel
Strand 3	A	416	420	anti-parallel
Strand 4	A	427	428	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	554	555	first strand
Strand 2	A	586	587	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	604	first strand
Strand 2	A	628	631	anti-parallel
Strand 3	A	634	637	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	872	873	first strand
Strand 2	A	879	880	anti-parallel
Strand 3	A	886	888	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	902	905	first strand
Strand 2	A	976	979	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1336	1337	first strand
Strand 2	A	1139	1141	anti-parallel
Strand 3	A	1358	1359	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1244	1247	first strand
Strand 2	A	1256	1260	anti-parallel
Strand 3	A	1211	1215	anti-parallel
Strand 4	A	1172	1176	anti-parallel
Strand 5	I	52	57	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1319	1320	first strand
Strand 2	A	1330	1331	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	119	first strand
Strand 2	F	104	109	anti-parallel
Strand 3	A	1472	1475	anti-parallel
Strand 4	G	57	59	anti-parallel
Strand 5	G	66	77	anti-parallel
Strand 6	G	2	13	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	119	first strand
Strand 2	F	104	109	anti-parallel
Strand 3	A	1472	1475	anti-parallel
Strand 4	G	57	59	anti-parallel
Strand 5	G	66	77	anti-parallel
Strand 6	G	44	54	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	92	first strand
Strand 2	B	121	133	anti-parallel
Strand 3	B	139	153	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	B	105	107	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	187	first strand
Strand 2	B	190	193	anti-parallel
Strand 3	B	468	469	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	197	first strand
Strand 2	B	485	486	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	200	first strand
Strand 2	B	391	392	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	207	first strand
Strand 2	B	219	220	anti-parallel
Strand 3	B	236	239	anti-parallel
Strand 4	B	256	257	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	573	first strand
Strand 2	B	566	569	anti-parallel
Strand 3	B	611	615	parallel
Strand 4	B	602	606	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	633	first strand
Strand 2	B	622	629	anti-parallel
Strand 3	B	662	666	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	633	first strand
Strand 2	B	622	629	anti-parallel
Strand 3	B	695	696	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	749	751	first strand
Strand 2	B	808	810	anti-parallel
Strand 3	B	917	927	anti-parallel
Strand 4	B	903	911	anti-parallel
Strand 5	B	858	859	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	749	751	first strand
Strand 2	B	808	810	anti-parallel
Strand 3	B	917	927	anti-parallel
Strand 4	B	903	911	anti-parallel
Strand 5	L	43	45	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	759	760	first strand
Strand 2	B	997	998	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	935	936	first strand
Strand 2	B	1041	1050	anti-parallel
Strand 3	B	776	782	anti-parallel
Strand 4	B	965	967	parallel
Strand 5	B	794	797	anti-parallel
Strand 6	B	948	949	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	935	936	first strand
Strand 2	B	1041	1050	anti-parallel
Strand 3	B	1025	1026	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	827	829	first strand
Strand 2	B	865	871	anti-parallel
Strand 3	B	892	895	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	15	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	232	234	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	55	first strand
Strand 2	C	157	168	anti-parallel
Strand 3	C	106	107	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	55	first strand
Strand 2	C	157	168	anti-parallel
Strand 3	C	101	103	anti-parallel
Strand 4	C	121	122	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	116	first strand
Strand 2	C	149	153	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	62	first strand
Strand 2	E	72	74	anti-parallel
Strand 3	E	101	106	parallel
Strand 4	E	127	131	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	150	first strand
Strand 2	E	190	195	anti-parallel
Strand 3	E	203	210	anti-parallel
Strand 4	E	172	174	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	85	88	first strand
Strand 2	G	142	145	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	99	101	first strand
Strand 2	G	104	108	anti-parallel
Strand 3	G	157	161	parallel
Strand 4	G	151	152	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	120	first strand
Strand 2	G	127	129	anti-parallel

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There are 8 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	113	117	first strand
Strand 2	H	91	100	anti-parallel
Strand 3	H	139	147	anti-parallel
Strand 4	H	56	61	anti-parallel
Strand 5	H	4	14	anti-parallel
Strand 6	H	28	31	anti-parallel
Strand 7	H	39	41	anti-parallel
Strand 8	H	123	124	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	29	first strand
Strand 2	I	34	38	anti-parallel
Strand 3	I	45	47	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	80	81	first strand
Strand 2	I	94	97	anti-parallel
Strand 3	I	110	114	anti-parallel
Strand 4	I	122	125	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	22	23	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	62	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	16	17	first strand
Strand 2	L	26	27	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DRD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DRD