Analysis of interatomic Contacts of Structural Units in PDB entry:
6DRE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DRE entry

There are 2 chains in PDB entry 6DRE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2PHE 366
B
 GLU 3PRO 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6DRE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 15Right-handed alpha
Helix 2
AA2
A
16 22Right-handed 310
Helix 3
AA3
A
26 33Right-handed alpha
Helix 4
AA4
A
53 57Right-handed 310
Helix 5
AA5
A
64 87Right-handed alpha
Helix 6
AA6
A
88 90Right-handed 310
Helix 7
AA7
A
116 133Right-handed alpha
Helix 8
AA8
A
136 151Right-handed alpha
Helix 9
AA9
A
163 177Right-handed alpha
Helix 10
AB1
A
185 189Right-handed 310
Helix 11
AB2
A
193 196Right-handed 310
Helix 12
AB3
A
197 204Right-handed alpha
Helix 13
AB4
A
207 221Right-handed alpha
Helix 14
AB5
A
225 244Right-handed alpha
Helix 15
AB6
A
247 252Right-handed alpha
Helix 16
AB7
A
260 268Right-handed alpha
Helix 17
AB8
A
275 279Right-handed 310
Helix 18
AB9
A
284 298Right-handed alpha
Helix 19
AC1
A
301 311Right-handed alpha
Helix 20
AC2
A
315 332Right-handed alpha
Helix 21
AC3
A
333 336Right-handed 310
Helix 22
AC4
A
337 344Right-handed alpha
Helix 23
AC5
A
346 361Right-handed alpha
Helix 24
AC6
B
4 25Right-handed alpha
Helix 25
AC7
B
28 39Right-handed alpha
Helix 26
AC8
B
40 52Right-handed alpha
Helix 27
AC9
B
58 75Right-handed alpha
Helix 28
AD1
B
89 95Right-handed alpha
Helix 29
AD2
B
133 136Right-handed 310
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There are 2 sheets in PDB entry 6DRE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 86first strand
Strand 2
B
120 126anti-parallel
Strand 3
B
163 170parallel
Strand 4
B
151 160anti-parallel
Strand 5
B
101 103anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 111first strand
Strand 2
B
143 146anti-parallel
Strand 3
B
130 131anti-parallel
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