Analysis of interatomic Contacts of Structural Units in PDB entry:
6DRH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DRH entry

There are 8 chains in PDB entry 6DRH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 2	PHE 366
B	HIS 8	PRO 192
C	ILE 2	PHE 366
D	HIS 8	PRO 192
E	MET 1	PHE 366
F	HIS 8	PRO 192
G	ILE 2	PHE 366
H	HIS 8	PRO 192

There are121 helices in PDB entry 6DRH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	15	Right-handed alpha
Helix 2	AA2	A	16	22	Right-handed 310
Helix 3	AA3	A	26	34	Right-handed alpha
Helix 4	AA4	A	53	57	Right-handed 310
Helix 5	AA5	A	64	87	Right-handed alpha
Helix 6	AA6	A	88	90	Right-handed 310
Helix 7	AA7	A	116	133	Right-handed alpha
Helix 8	AA8	A	136	151	Right-handed alpha
Helix 9	AA9	A	163	177	Right-handed alpha
Helix 10	AB1	A	185	189	Right-handed 310
Helix 11	AB2	A	193	196	Right-handed 310
Helix 12	AB3	A	197	204	Right-handed alpha
Helix 13	AB4	A	207	221	Right-handed alpha
Helix 14	AB5	A	225	244	Right-handed alpha
Helix 15	AB6	A	247	253	Right-handed alpha
Helix 16	AB7	A	260	268	Right-handed alpha
Helix 17	AB8	A	269	274	Right-handed 310
Helix 18	AB9	A	275	279	Right-handed 310
Helix 19	AC1	A	284	298	Right-handed alpha
Helix 20	AC2	A	301	311	Right-handed alpha
Helix 21	AC3	A	315	332	Right-handed alpha
Helix 22	AC4	A	333	336	Right-handed 310
Helix 23	AC5	A	337	344	Right-handed alpha
Helix 24	AC6	A	346	361	Right-handed alpha
Helix 25	AC7	B	14	18	Right-handed 310
Helix 26	AC8	B	23	45	Right-handed alpha
Helix 27	AC9	B	48	59	Right-handed alpha
Helix 28	AD1	B	60	72	Right-handed alpha
Helix 29	AD2	B	78	95	Right-handed alpha
Helix 30	AD3	B	109	116	Right-handed alpha
Helix 31	AD4	B	153	156	Right-handed 310
Helix 32	AD5	C	7	16	Right-handed alpha
Helix 33	AD6	C	17	22	Right-handed 310
Helix 34	AD7	C	26	33	Right-handed alpha
Helix 35	AD8	C	53	57	Right-handed 310
Helix 36	AD9	C	64	87	Right-handed alpha
Helix 37	AE1	C	88	90	Right-handed 310
Helix 38	AE2	C	116	133	Right-handed alpha
Helix 39	AE3	C	136	151	Right-handed alpha
Helix 40	AE4	C	163	177	Right-handed alpha
Helix 41	AE5	C	185	189	Right-handed 310
Helix 42	AE6	C	193	196	Right-handed 310
Helix 43	AE7	C	197	204	Right-handed alpha
Helix 44	AE8	C	207	221	Right-handed alpha
Helix 45	AE9	C	225	244	Right-handed alpha
Helix 46	AF1	C	247	252	Right-handed alpha
Helix 47	AF2	C	260	268	Right-handed alpha
Helix 48	AF3	C	269	274	Right-handed 310
Helix 49	AF4	C	275	279	Right-handed 310
Helix 50	AF5	C	284	298	Right-handed alpha
Helix 51	AF6	C	301	311	Right-handed alpha
Helix 52	AF7	C	315	332	Right-handed alpha
Helix 53	AF8	C	333	336	Right-handed 310
Helix 54	AF9	C	337	344	Right-handed alpha
Helix 55	AG1	C	346	361	Right-handed alpha
Helix 56	AG2	D	22	45	Right-handed alpha
Helix 57	AG3	D	48	59	Right-handed alpha
Helix 58	AG4	D	60	72	Right-handed alpha
Helix 59	AG5	D	78	95	Right-handed alpha
Helix 60	AG6	D	109	115	Right-handed alpha
Helix 61	AG7	D	153	156	Right-handed 310
Helix 62	AG8	E	7	18	Right-handed alpha
Helix 63	AG9	E	19	22	Right-handed 310
Helix 64	AH1	E	26	34	Right-handed alpha
Helix 65	AH2	E	53	57	Right-handed 310
Helix 66	AH3	E	64	87	Right-handed alpha
Helix 67	AH4	E	88	90	Right-handed 310
Helix 68	AH5	E	116	133	Right-handed alpha
Helix 69	AH6	E	136	151	Right-handed alpha
Helix 70	AH7	E	163	177	Right-handed alpha
Helix 71	AH8	E	185	189	Right-handed 310
Helix 72	AH9	E	193	196	Right-handed 310
Helix 73	AI1	E	197	204	Right-handed alpha
Helix 74	AI2	E	207	221	Right-handed alpha
Helix 75	AI3	E	225	244	Right-handed alpha
Helix 76	AI4	E	247	252	Right-handed alpha
Helix 77	AI5	E	260	269	Right-handed alpha
Helix 78	AI6	E	270	274	Right-handed 310
Helix 79	AI7	E	275	279	Right-handed 310
Helix 80	AI8	E	284	298	Right-handed alpha
Helix 81	AI9	E	301	311	Right-handed alpha
Helix 82	AJ1	E	315	332	Right-handed alpha
Helix 83	AJ2	E	333	336	Right-handed 310
Helix 84	AJ3	E	337	344	Right-handed alpha
Helix 85	AJ4	E	346	361	Right-handed alpha
Helix 86	AJ5	F	24	45	Right-handed alpha
Helix 87	AJ6	F	48	59	Right-handed alpha
Helix 88	AJ7	F	60	72	Right-handed alpha
Helix 89	AJ8	F	78	95	Right-handed alpha
Helix 90	AJ9	F	109	115	Right-handed alpha
Helix 91	AK1	F	153	156	Right-handed 310
Helix 92	AK2	G	7	16	Right-handed alpha
Helix 93	AK3	G	17	22	Right-handed 310
Helix 94	AK4	G	26	34	Right-handed alpha
Helix 95	AK5	G	53	57	Right-handed 310
Helix 96	AK6	G	64	87	Right-handed alpha
Helix 97	AK7	G	88	90	Right-handed 310
Helix 98	AK8	G	116	133	Right-handed alpha
Helix 99	AK9	G	136	151	Right-handed alpha
Helix 100	AL1	G	163	177	Right-handed alpha
Helix 101	AL2	G	185	189	Right-handed 310
Helix 102	AL3	G	193	196	Right-handed 310
Helix 103	AL4	G	197	204	Right-handed alpha
Helix 104	AL5	G	207	221	Right-handed alpha
Helix 105	AL6	G	225	244	Right-handed alpha
Helix 106	AL7	G	247	252	Right-handed alpha
Helix 107	AL8	G	260	268	Right-handed alpha
Helix 108	AL9	G	269	274	Right-handed 310
Helix 109	AM1	G	275	279	Right-handed 310
Helix 110	AM2	G	284	298	Right-handed alpha
Helix 111	AM3	G	301	311	Right-handed alpha
Helix 112	AM4	G	315	332	Right-handed alpha
Helix 113	AM5	G	333	336	Right-handed 310
Helix 114	AM6	G	337	344	Right-handed alpha
Helix 115	AM7	G	346	361	Right-handed alpha
Helix 116	AM8	H	21	45	Right-handed alpha
Helix 117	AM9	H	48	59	Right-handed alpha
Helix 118	AN1	H	60	72	Right-handed alpha
Helix 119	AN2	H	78	95	Right-handed alpha
Helix 120	AN3	H	109	116	Right-handed alpha
Helix 121	AN4	H	153	156	Right-handed 310

There are 8 sheets in PDB entry 6DRH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	106	first strand
Strand 2	B	140	145	anti-parallel
Strand 3	B	183	190	parallel
Strand 4	B	171	180	anti-parallel
Strand 5	B	121	123	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	163	166	anti-parallel
Strand 3	B	150	151	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	106	first strand
Strand 2	D	140	145	anti-parallel
Strand 3	D	183	190	parallel
Strand 4	D	171	180	anti-parallel
Strand 5	D	121	123	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	131	first strand
Strand 2	D	163	166	anti-parallel
Strand 3	D	150	151	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	106	first strand
Strand 2	F	140	146	anti-parallel
Strand 3	F	183	190	parallel
Strand 4	F	171	180	anti-parallel
Strand 5	F	121	123	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	131	first strand
Strand 2	F	163	166	anti-parallel
Strand 3	F	150	151	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	106	first strand
Strand 2	H	140	146	anti-parallel
Strand 3	H	183	190	parallel
Strand 4	H	171	180	anti-parallel
Strand 5	H	121	123	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	131	first strand
Strand 2	H	163	166	anti-parallel
Strand 3	H	150	151	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DRH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DRH