Analysis of interatomic Contacts of Structural Units in PDB entry:
6DRK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DRK entry

There are 4 chains in PDB entry 6DRK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 39	PHE 1474
C	SER 39	PHE 1474
B	SER 39	PHE 1474
D	SER 39	PHE 1474

There are216 helices in PDB entry 6DRK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	45	Right-handed alpha
Helix 2	AA2	A	126	136	Right-handed alpha
Helix 3	AA3	A	161	177	Right-handed alpha
Helix 4	AA4	A	189	206	Right-handed alpha
Helix 5	AA5	A	225	229	Right-handed 310
Helix 6	AA6	A	274	286	Right-handed alpha
Helix 7	AA7	A	287	289	Right-handed 310
Helix 8	AA8	A	311	323	Right-handed alpha
Helix 9	AA9	A	333	343	Right-handed alpha
Helix 10	AB1	A	351	361	Right-handed alpha
Helix 11	AB2	A	374	386	Right-handed alpha
Helix 12	AB3	A	404	419	Right-handed alpha
Helix 13	AB4	A	425	438	Right-handed alpha
Helix 14	AB5	A	441	449	Right-handed alpha
Helix 15	AB6	A	460	470	Right-handed alpha
Helix 16	AB7	A	472	482	Right-handed alpha
Helix 17	AB8	A	485	490	Right-handed alpha
Helix 18	AB9	A	492	500	Right-handed alpha
Helix 19	AC1	A	501	503	Right-handed 310
Helix 20	AC2	A	506	516	Right-handed alpha
Helix 21	AC3	A	536	548	Right-handed alpha
Helix 22	AC4	A	593	604	Right-handed alpha
Helix 23	AC5	A	607	616	Right-handed alpha
Helix 24	AC6	A	621	640	Right-handed alpha
Helix 25	AC7	A	642	672	Right-handed alpha
Helix 26	AC8	A	672	682	Right-handed alpha
Helix 27	AC9	A	692	699	Right-handed alpha
Helix 28	AD1	A	701	706	Right-handed alpha
Helix 29	AD2	A	707	719	Right-handed alpha
Helix 30	AD3	A	727	737	Right-handed alpha
Helix 31	AD4	A	738	744	Right-handed alpha
Helix 32	AD5	A	748	770	Right-handed alpha
Helix 33	AD6	A	799	806	Right-handed alpha
Helix 34	AD7	A	808	833	Right-handed alpha
Helix 35	AD8	A	840	863	Right-handed alpha
Helix 36	AD9	A	871	878	Right-handed alpha
Helix 37	AE1	A	881	902	Right-handed alpha
Helix 38	AE2	A	906	925	Right-handed alpha
Helix 39	AE3	A	925	930	Right-handed alpha
Helix 40	AE4	A	936	946	Right-handed alpha
Helix 41	AE5	A	948	973	Right-handed alpha
Helix 42	AE6	A	978	987	Right-handed alpha
Helix 43	AE7	A	987	994	Right-handed alpha
Helix 44	AE8	A	997	1002	Right-handed alpha
Helix 45	AE9	A	1036	1071	Right-handed alpha
Helix 46	AF1	A	1074	1090	Right-handed alpha
Helix 47	AF2	A	1099	1112	Right-handed alpha
Helix 48	AF3	A	1129	1156	Right-handed alpha
Helix 49	AF4	A	1158	1186	Right-handed alpha
Helix 50	AF5	A	1368	1378	Right-handed alpha
Helix 51	AF6	A	1382	1388	Right-handed alpha
Helix 52	AF7	A	1426	1433	Right-handed alpha
Helix 53	AF8	A	1456	1471	Right-handed alpha
Helix 54	AF9	A	1472	1474	Right-handed 310
Helix 55	AG1	C	40	45	Right-handed alpha
Helix 56	AG2	C	126	136	Right-handed alpha
Helix 57	AG3	C	161	177	Right-handed alpha
Helix 58	AG4	C	189	206	Right-handed alpha
Helix 59	AG5	C	225	229	Right-handed 310
Helix 60	AG6	C	274	286	Right-handed alpha
Helix 61	AG7	C	287	289	Right-handed 310
Helix 62	AG8	C	311	323	Right-handed alpha
Helix 63	AG9	C	333	343	Right-handed alpha
Helix 64	AH1	C	351	361	Right-handed alpha
Helix 65	AH2	C	374	386	Right-handed alpha
Helix 66	AH3	C	404	419	Right-handed alpha
Helix 67	AH4	C	425	438	Right-handed alpha
Helix 68	AH5	C	441	449	Right-handed alpha
Helix 69	AH6	C	460	470	Right-handed alpha
Helix 70	AH7	C	472	482	Right-handed alpha
Helix 71	AH8	C	485	490	Right-handed alpha
Helix 72	AH9	C	492	500	Right-handed alpha
Helix 73	AI1	C	501	503	Right-handed 310
Helix 74	AI2	C	506	516	Right-handed alpha
Helix 75	AI3	C	536	548	Right-handed alpha
Helix 76	AI4	C	593	604	Right-handed alpha
Helix 77	AI5	C	607	616	Right-handed alpha
Helix 78	AI6	C	621	640	Right-handed alpha
Helix 79	AI7	C	642	672	Right-handed alpha
Helix 80	AI8	C	672	682	Right-handed alpha
Helix 81	AI9	C	692	699	Right-handed alpha
Helix 82	AJ1	C	701	706	Right-handed alpha
Helix 83	AJ2	C	707	719	Right-handed alpha
Helix 84	AJ3	C	727	737	Right-handed alpha
Helix 85	AJ4	C	738	744	Right-handed alpha
Helix 86	AJ5	C	748	770	Right-handed alpha
Helix 87	AJ6	C	799	806	Right-handed alpha
Helix 88	AJ7	C	808	833	Right-handed alpha
Helix 89	AJ8	C	840	863	Right-handed alpha
Helix 90	AJ9	C	871	878	Right-handed alpha
Helix 91	AK1	C	881	902	Right-handed alpha
Helix 92	AK2	C	906	925	Right-handed alpha
Helix 93	AK3	C	925	930	Right-handed alpha
Helix 94	AK4	C	936	946	Right-handed alpha
Helix 95	AK5	C	948	973	Right-handed alpha
Helix 96	AK6	C	978	987	Right-handed alpha
Helix 97	AK7	C	987	994	Right-handed alpha
Helix 98	AK8	C	997	1002	Right-handed alpha
Helix 99	AK9	C	1036	1071	Right-handed alpha
Helix 100	AL1	C	1074	1090	Right-handed alpha
Helix 101	AL2	C	1099	1112	Right-handed alpha
Helix 102	AL3	C	1129	1156	Right-handed alpha
Helix 103	AL4	C	1158	1186	Right-handed alpha
Helix 104	AL5	C	1368	1378	Right-handed alpha
Helix 105	AL6	C	1382	1388	Right-handed alpha
Helix 106	AL7	C	1426	1433	Right-handed alpha
Helix 107	AL8	C	1456	1471	Right-handed alpha
Helix 108	AL9	C	1472	1474	Right-handed 310
Helix 109	AM1	B	40	45	Right-handed alpha
Helix 110	AM2	B	126	136	Right-handed alpha
Helix 111	AM3	B	161	177	Right-handed alpha
Helix 112	AM4	B	189	206	Right-handed alpha
Helix 113	AM5	B	225	229	Right-handed 310
Helix 114	AM6	B	274	286	Right-handed alpha
Helix 115	AM7	B	287	289	Right-handed 310
Helix 116	AM8	B	311	323	Right-handed alpha
Helix 117	AM9	B	333	343	Right-handed alpha
Helix 118	AN1	B	351	361	Right-handed alpha
Helix 119	AN2	B	374	386	Right-handed alpha
Helix 120	AN3	B	404	419	Right-handed alpha
Helix 121	AN4	B	425	438	Right-handed alpha
Helix 122	AN5	B	441	449	Right-handed alpha
Helix 123	AN6	B	460	470	Right-handed alpha
Helix 124	AN7	B	472	482	Right-handed alpha
Helix 125	AN8	B	485	490	Right-handed alpha
Helix 126	AN9	B	492	500	Right-handed alpha
Helix 127	AO1	B	501	503	Right-handed 310
Helix 128	AO2	B	506	516	Right-handed alpha
Helix 129	AO3	B	536	548	Right-handed alpha
Helix 130	AO4	B	593	604	Right-handed alpha
Helix 131	AO5	B	607	616	Right-handed alpha
Helix 132	AO6	B	621	640	Right-handed alpha
Helix 133	AO7	B	642	672	Right-handed alpha
Helix 134	AO8	B	672	682	Right-handed alpha
Helix 135	AO9	B	692	699	Right-handed alpha
Helix 136	AP1	B	701	706	Right-handed alpha
Helix 137	AP2	B	707	719	Right-handed alpha
Helix 138	AP3	B	727	737	Right-handed alpha
Helix 139	AP4	B	738	744	Right-handed alpha
Helix 140	AP5	B	748	770	Right-handed alpha
Helix 141	AP6	B	799	806	Right-handed alpha
Helix 142	AP7	B	808	833	Right-handed alpha
Helix 143	AP8	B	840	863	Right-handed alpha
Helix 144	AP9	B	871	878	Right-handed alpha
Helix 145	AQ1	B	881	902	Right-handed alpha
Helix 146	AQ2	B	906	925	Right-handed alpha
Helix 147	AQ3	B	925	930	Right-handed alpha
Helix 148	AQ4	B	936	946	Right-handed alpha
Helix 149	AQ5	B	948	973	Right-handed alpha
Helix 150	AQ6	B	978	987	Right-handed alpha
Helix 151	AQ7	B	987	994	Right-handed alpha
Helix 152	AQ8	B	997	1002	Right-handed alpha
Helix 153	AQ9	B	1036	1071	Right-handed alpha
Helix 154	AR1	B	1074	1090	Right-handed alpha
Helix 155	AR2	B	1099	1112	Right-handed alpha
Helix 156	AR3	B	1129	1156	Right-handed alpha
Helix 157	AR4	B	1158	1186	Right-handed alpha
Helix 158	AR5	B	1368	1378	Right-handed alpha
Helix 159	AR6	B	1382	1388	Right-handed alpha
Helix 160	AR7	B	1426	1433	Right-handed alpha
Helix 161	AR8	B	1456	1471	Right-handed alpha
Helix 162	AR9	B	1472	1474	Right-handed 310
Helix 163	AS1	D	40	45	Right-handed alpha
Helix 164	AS2	D	126	136	Right-handed alpha
Helix 165	AS3	D	161	177	Right-handed alpha
Helix 166	AS4	D	189	206	Right-handed alpha
Helix 167	AS5	D	225	229	Right-handed 310
Helix 168	AS6	D	274	286	Right-handed alpha
Helix 169	AS7	D	287	289	Right-handed 310
Helix 170	AS8	D	311	323	Right-handed alpha
Helix 171	AS9	D	333	343	Right-handed alpha
Helix 172	AT1	D	351	361	Right-handed alpha
Helix 173	AT2	D	374	386	Right-handed alpha
Helix 174	AT3	D	404	419	Right-handed alpha
Helix 175	AT4	D	425	438	Right-handed alpha
Helix 176	AT5	D	441	449	Right-handed alpha
Helix 177	AT6	D	460	470	Right-handed alpha
Helix 178	AT7	D	472	482	Right-handed alpha
Helix 179	AT8	D	485	490	Right-handed alpha
Helix 180	AT9	D	492	500	Right-handed alpha
Helix 181	AU1	D	501	503	Right-handed 310
Helix 182	AU2	D	506	516	Right-handed alpha
Helix 183	AU3	D	536	548	Right-handed alpha
Helix 184	AU4	D	593	604	Right-handed alpha
Helix 185	AU5	D	607	616	Right-handed alpha
Helix 186	AU6	D	621	640	Right-handed alpha
Helix 187	AU7	D	642	672	Right-handed alpha
Helix 188	AU8	D	672	682	Right-handed alpha
Helix 189	AU9	D	692	699	Right-handed alpha
Helix 190	AV1	D	701	706	Right-handed alpha
Helix 191	AV2	D	707	719	Right-handed alpha
Helix 192	AV3	D	727	737	Right-handed alpha
Helix 193	AV4	D	738	744	Right-handed alpha
Helix 194	AV5	D	748	770	Right-handed alpha
Helix 195	AV6	D	799	806	Right-handed alpha
Helix 196	AV7	D	808	833	Right-handed alpha
Helix 197	AV8	D	840	863	Right-handed alpha
Helix 198	AV9	D	871	878	Right-handed alpha
Helix 199	AW1	D	881	902	Right-handed alpha
Helix 200	AW2	D	906	925	Right-handed alpha
Helix 201	AW3	D	925	930	Right-handed alpha
Helix 202	AW4	D	936	946	Right-handed alpha
Helix 203	AW5	D	948	973	Right-handed alpha
Helix 204	AW6	D	978	987	Right-handed alpha
Helix 205	AW7	D	987	994	Right-handed alpha
Helix 206	AW8	D	997	1002	Right-handed alpha
Helix 207	AW9	D	1036	1071	Right-handed alpha
Helix 208	AX1	D	1074	1090	Right-handed alpha
Helix 209	AX2	D	1099	1112	Right-handed alpha
Helix 210	AX3	D	1129	1156	Right-handed alpha
Helix 211	AX4	D	1158	1186	Right-handed alpha
Helix 212	AX5	D	1368	1378	Right-handed alpha
Helix 213	AX6	D	1382	1388	Right-handed alpha
Helix 214	AX7	D	1426	1433	Right-handed alpha
Helix 215	AX8	D	1456	1471	Right-handed alpha
Helix 216	AX9	D	1472	1474	Right-handed 310

There are 16 sheets in PDB entry 6DRK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	96	99	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	240	first strand
Strand 2	A	104	108	parallel
Strand 3	A	116	122	anti-parallel
Strand 4	A	259	264	parallel
Strand 5	A	214	219	parallel
Strand 6	A	180	184	parallel
Strand 7	A	146	150	parallel
Strand 8	A	301	305	parallel
Strand 9	A	326	329	parallel
Strand 10	A	392	394	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1356	1357	first strand
Strand 2	A	1343	1349	anti-parallel
Strand 3	A	1323	1335	anti-parallel
Strand 4	A	1409	1419	parallel
Strand 5	A	1396	1399	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1356	1357	first strand
Strand 2	A	1343	1349	anti-parallel
Strand 3	A	1444	1448	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	52	first strand
Strand 2	C	96	99	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	240	first strand
Strand 2	C	104	108	parallel
Strand 3	C	116	122	anti-parallel
Strand 4	C	259	264	parallel
Strand 5	C	214	219	parallel
Strand 6	C	180	184	parallel
Strand 7	C	146	150	parallel
Strand 8	C	301	305	parallel
Strand 9	C	326	329	parallel
Strand 10	C	392	394	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1356	1357	first strand
Strand 2	C	1343	1349	anti-parallel
Strand 3	C	1323	1335	anti-parallel
Strand 4	C	1409	1419	parallel
Strand 5	C	1396	1399	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1356	1357	first strand
Strand 2	C	1343	1349	anti-parallel
Strand 3	C	1444	1448	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	96	99	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	240	first strand
Strand 2	B	104	108	parallel
Strand 3	B	116	122	anti-parallel
Strand 4	B	259	264	parallel
Strand 5	B	214	219	parallel
Strand 6	B	180	184	parallel
Strand 7	B	146	150	parallel
Strand 8	B	301	305	parallel
Strand 9	B	326	329	parallel
Strand 10	B	392	394	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1356	1357	first strand
Strand 2	B	1343	1349	anti-parallel
Strand 3	B	1323	1335	anti-parallel
Strand 4	B	1409	1419	parallel
Strand 5	B	1396	1399	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1356	1357	first strand
Strand 2	B	1343	1349	anti-parallel
Strand 3	B	1444	1448	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	52	first strand
Strand 2	D	96	99	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	240	first strand
Strand 2	D	104	108	parallel
Strand 3	D	116	122	anti-parallel
Strand 4	D	259	264	parallel
Strand 5	D	214	219	parallel
Strand 6	D	180	184	parallel
Strand 7	D	146	150	parallel
Strand 8	D	301	305	parallel
Strand 9	D	326	329	parallel
Strand 10	D	392	394	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1356	1357	first strand
Strand 2	D	1343	1349	anti-parallel
Strand 3	D	1323	1335	anti-parallel
Strand 4	D	1409	1419	parallel
Strand 5	D	1396	1399	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1356	1357	first strand
Strand 2	D	1343	1349	anti-parallel
Strand 3	D	1444	1448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DRK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DRK