Analysis of interatomic Contacts of Structural Units in PDB entry:
6DRT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DRT entry

There are 6 chains in PDB entry 6DRT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1001	GLU 1230
B	MET 1001	PHE 1228
C	MET 1001	GLU 1230
D	GLU 229	ALA 237
E	GLU 227	ALA 237
F	GLU 229	ALA 237

There are 18 helices in PDB entry 6DRT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1004	1018	Right-handed alpha
Helix 2	AA2	A	1056	1065	Right-handed alpha
Helix 3	AA3	A	1096	1100	Right-handed 310
Helix 4	AA4	A	1119	1134	Right-handed alpha
Helix 5	AA5	A	1185	1187	Right-handed 310
Helix 6	AA6	B	1004	1018	Right-handed alpha
Helix 7	AA7	B	1056	1065	Right-handed alpha
Helix 8	AA8	B	1096	1100	Right-handed 310
Helix 9	AA9	B	1119	1133	Right-handed alpha
Helix 10	AB1	B	1185	1187	Right-handed 310
Helix 11	AB2	C	1004	1016	Right-handed alpha
Helix 12	AB3	C	1056	1065	Right-handed alpha
Helix 13	AB4	C	1096	1100	Right-handed 310
Helix 14	AB5	C	1119	1133	Right-handed alpha
Helix 15	AB6	C	1185	1187	Right-handed 310
Helix 16	AB7	D	231	236	Right-handed alpha
Helix 17	AB8	E	231	236	Right-handed alpha
Helix 18	AB9	F	231	236	Right-handed alpha

There are 9 sheets in PDB entry 6DRT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1021	1023	first strand
Strand 2	A	1052	1054	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1026	1032	first strand
Strand 2	A	1038	1048	anti-parallel
Strand 3	A	1215	1219	anti-parallel
Strand 4	A	1204	1211	anti-parallel
Strand 5	A	1194	1201	anti-parallel
Strand 6	A	1114	1118	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1072	1075	first strand
Strand 2	A	1081	1084	anti-parallel
Strand 3	A	1088	1092	anti-parallel
Strand 4	C	1165	1171	anti-parallel
Strand 5	C	1146	1152	anti-parallel
Strand 6	C	1137	1142	anti-parallel
Strand 7	C	1177	1183	anti-parallel
Strand 8	C	1225	1227	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1225	1227	first strand
Strand 2	A	1177	1183	anti-parallel
Strand 3	A	1137	1143	anti-parallel
Strand 4	A	1146	1152	anti-parallel
Strand 5	A	1165	1171	anti-parallel
Strand 6	B	1088	1092	anti-parallel
Strand 7	B	1081	1084	anti-parallel
Strand 8	B	1072	1075	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1021	1023	first strand
Strand 2	B	1052	1054	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1026	1032	first strand
Strand 2	B	1038	1048	anti-parallel
Strand 3	B	1215	1219	anti-parallel
Strand 4	B	1204	1211	anti-parallel
Strand 5	B	1194	1201	anti-parallel
Strand 6	B	1114	1118	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1225	1227	first strand
Strand 2	B	1177	1183	anti-parallel
Strand 3	B	1137	1143	anti-parallel
Strand 4	B	1146	1152	anti-parallel
Strand 5	B	1165	1171	anti-parallel
Strand 6	C	1088	1092	anti-parallel
Strand 7	C	1081	1084	anti-parallel
Strand 8	C	1072	1075	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1021	1023	first strand
Strand 2	C	1052	1054	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1026	1032	first strand
Strand 2	C	1038	1048	anti-parallel
Strand 3	C	1215	1219	anti-parallel
Strand 4	C	1204	1211	anti-parallel
Strand 5	C	1194	1201	anti-parallel
Strand 6	C	1114	1118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DRT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DRT