Analysis of interatomic Contacts of Structural Units in PDB entry:
6DRU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DRU entry

There are 2 chains in PDB entry 6DRU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 1	PHE 718
B	TYR 2	PHE 718

There are 38 helices in PDB entry 6DRU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	227	240	Right-handed alpha
Helix 2	AA2	A	246	250	Right-handed 310
Helix 3	AA3	A	261	275	Right-handed alpha
Helix 4	AA4	A	304	317	Right-handed alpha
Helix 5	AA5	A	334	341	Right-handed alpha
Helix 6	AA6	A	369	384	Right-handed alpha
Helix 7	AA7	A	385	388	Right-handed 310
Helix 8	AA8	A	412	418	Right-handed alpha
Helix 9	AA9	A	431	436	Right-handed alpha
Helix 10	AB1	A	438	456	Right-handed alpha
Helix 11	AB2	A	475	479	Right-handed 310
Helix 12	AB3	A	491	509	Right-handed alpha
Helix 13	AB4	A	534	549	Right-handed alpha
Helix 14	AB5	A	581	595	Right-handed alpha
Helix 15	AB6	A	595	610	Right-handed alpha
Helix 16	AB7	A	617	622	Right-handed alpha
Helix 17	AB8	A	627	634	Right-handed alpha
Helix 18	AB9	A	636	641	Right-handed alpha
Helix 19	AC1	A	708	713	Right-handed alpha
Helix 20	AC2	B	227	240	Right-handed alpha
Helix 21	AC3	B	246	250	Right-handed 310
Helix 22	AC4	B	261	275	Right-handed alpha
Helix 23	AC5	B	304	317	Right-handed alpha
Helix 24	AC6	B	334	341	Right-handed alpha
Helix 25	AC7	B	369	384	Right-handed alpha
Helix 26	AC8	B	385	388	Right-handed 310
Helix 27	AC9	B	412	418	Right-handed alpha
Helix 28	AD1	B	431	436	Right-handed alpha
Helix 29	AD2	B	437	456	Right-handed alpha
Helix 30	AD3	B	475	479	Right-handed 310
Helix 31	AD4	B	491	509	Right-handed alpha
Helix 32	AD5	B	534	549	Right-handed alpha
Helix 33	AD6	B	581	595	Right-handed alpha
Helix 34	AD7	B	595	610	Right-handed alpha
Helix 35	AD8	B	617	622	Right-handed alpha
Helix 36	AD9	B	627	634	Right-handed alpha
Helix 37	AE1	B	636	641	Right-handed alpha
Helix 38	AE2	B	708	713	Right-handed alpha

There are 16 sheets in PDB entry 6DRU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	10	14	parallel
Strand 3	A	17	23	anti-parallel
Strand 4	A	28	35	anti-parallel
Strand 5	A	216	222	anti-parallel
Strand 6	A	187	191	anti-parallel
Strand 7	A	176	183	anti-parallel
Strand 8	A	149	154	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	78	first strand
Strand 2	A	81	85	anti-parallel
Strand 3	A	98	102	anti-parallel
Strand 4	A	108	113	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	127	first strand
Strand 2	A	135	142	anti-parallel
Strand 3	A	205	213	anti-parallel
Strand 4	A	197	201	anti-parallel
Strand 5	A	166	168	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	514	first strand
Strand 2	A	481	484	parallel
Strand 3	A	467	469	parallel
Strand 4	A	391	394	parallel
Strand 5	A	319	324	parallel
Strand 6	A	281	284	parallel
Strand 7	A	252	254	parallel
Strand 8	A	554	555	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	328	first strand
Strand 2	A	360	364	anti-parallel
Strand 3	A	355	357	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	425	426	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	614	615	first strand
Strand 2	A	643	645	anti-parallel
Strand 3	A	649	651	anti-parallel
Strand 4	A	703	705	anti-parallel
Strand 5	A	677	679	anti-parallel
Strand 6	A	685	686	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	661	666	first strand
Strand 2	A	690	695	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	10	14	parallel
Strand 3	B	17	23	anti-parallel
Strand 4	B	28	35	anti-parallel
Strand 5	B	216	222	anti-parallel
Strand 6	B	187	191	anti-parallel
Strand 7	B	176	183	anti-parallel
Strand 8	B	149	154	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	78	first strand
Strand 2	B	81	85	anti-parallel
Strand 3	B	98	102	anti-parallel
Strand 4	B	108	113	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	127	first strand
Strand 2	B	135	142	anti-parallel
Strand 3	B	205	213	anti-parallel
Strand 4	B	197	201	anti-parallel
Strand 5	B	166	169	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	514	first strand
Strand 2	B	481	484	parallel
Strand 3	B	467	469	parallel
Strand 4	B	391	394	parallel
Strand 5	B	319	324	parallel
Strand 6	B	281	284	parallel
Strand 7	B	252	254	parallel
Strand 8	B	554	555	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	B	360	364	anti-parallel
Strand 3	B	355	357	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	347	first strand
Strand 2	B	425	426	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	614	615	first strand
Strand 2	B	643	645	anti-parallel
Strand 3	B	649	651	anti-parallel
Strand 4	B	703	705	anti-parallel
Strand 5	B	677	679	anti-parallel
Strand 6	B	685	686	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	661	666	first strand
Strand 2	B	690	695	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DRU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DRU