Analysis of interatomic Contacts of Structural Units in PDB entry:
6DS5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DS5 entry

There are 11 chains in PDB entry 6DS5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 60	HIS 219
B	VAL 60	HIS 219
C	VAL 60	HIS 219
D	VAL 60	HIS 219
E	VAL 60	HIS 219
F	VAL 60	HIS 219
G	VAL 60	HIS 219
H	VAL 60	HIS 219
I	VAL 60	HIS 219
J	VAL 60	HIS 219
K	VAL 60	HIS 219

There are 44 helices in PDB entry 6DS5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	117	123	Right-handed alpha
Helix 2	AA2	A	153	164	Right-handed alpha
Helix 3	AA3	A	164	169	Right-handed alpha
Helix 4	AA4	A	189	193	Right-handed 310
Helix 5	AA5	B	117	123	Right-handed alpha
Helix 6	AA6	B	153	164	Right-handed alpha
Helix 7	AA7	B	164	169	Right-handed alpha
Helix 8	AA8	B	189	193	Right-handed 310
Helix 9	AA9	C	117	123	Right-handed alpha
Helix 10	AB1	C	153	164	Right-handed alpha
Helix 11	AB2	C	164	169	Right-handed alpha
Helix 12	AB3	C	189	193	Right-handed 310
Helix 13	AB4	D	117	123	Right-handed alpha
Helix 14	AB5	D	153	164	Right-handed alpha
Helix 15	AB6	D	164	169	Right-handed alpha
Helix 16	AB7	D	189	193	Right-handed 310
Helix 17	AB8	E	117	123	Right-handed alpha
Helix 18	AB9	E	153	164	Right-handed alpha
Helix 19	AC1	E	164	169	Right-handed alpha
Helix 20	AC2	E	189	193	Right-handed 310
Helix 21	AC3	F	117	123	Right-handed alpha
Helix 22	AC4	F	153	164	Right-handed alpha
Helix 23	AC5	F	164	169	Right-handed alpha
Helix 24	AC6	F	189	193	Right-handed 310
Helix 25	AC7	G	117	123	Right-handed alpha
Helix 26	AC8	G	153	164	Right-handed alpha
Helix 27	AC9	G	164	169	Right-handed alpha
Helix 28	AD1	G	189	193	Right-handed 310
Helix 29	AD2	H	117	123	Right-handed alpha
Helix 30	AD3	H	153	164	Right-handed alpha
Helix 31	AD4	H	164	169	Right-handed alpha
Helix 32	AD5	H	189	193	Right-handed 310
Helix 33	AD6	I	117	123	Right-handed alpha
Helix 34	AD7	I	153	164	Right-handed alpha
Helix 35	AD8	I	164	169	Right-handed alpha
Helix 36	AD9	I	189	193	Right-handed 310
Helix 37	AE1	J	117	123	Right-handed alpha
Helix 38	AE2	J	153	164	Right-handed alpha
Helix 39	AE3	J	164	169	Right-handed alpha
Helix 40	AE4	J	189	193	Right-handed 310
Helix 41	AE5	K	117	123	Right-handed alpha
Helix 42	AE6	K	153	164	Right-handed alpha
Helix 43	AE7	K	164	169	Right-handed alpha
Helix 44	AE8	K	189	193	Right-handed 310

There are 22 sheets in PDB entry 6DS5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	212	215	anti-parallel
Strand 3	A	106	112	anti-parallel
Strand 4	A	181	187	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	90	first strand
Strand 2	A	197	202	anti-parallel
Strand 3	A	125	133	anti-parallel
Strand 4	A	139	148	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	66	first strand
Strand 2	B	212	215	anti-parallel
Strand 3	B	106	112	anti-parallel
Strand 4	B	181	187	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	90	first strand
Strand 2	B	197	202	anti-parallel
Strand 3	B	125	133	anti-parallel
Strand 4	B	139	148	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	C	212	215	anti-parallel
Strand 3	C	106	112	anti-parallel
Strand 4	C	181	187	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	90	first strand
Strand 2	C	197	202	anti-parallel
Strand 3	C	125	133	anti-parallel
Strand 4	C	139	148	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	66	first strand
Strand 2	D	212	215	anti-parallel
Strand 3	D	106	112	anti-parallel
Strand 4	D	181	187	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	90	first strand
Strand 2	D	197	202	anti-parallel
Strand 3	D	125	133	anti-parallel
Strand 4	D	139	148	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	66	first strand
Strand 2	E	212	215	anti-parallel
Strand 3	E	106	112	anti-parallel
Strand 4	E	181	187	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	90	first strand
Strand 2	E	197	202	anti-parallel
Strand 3	E	125	133	anti-parallel
Strand 4	E	139	148	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	66	first strand
Strand 2	F	212	215	anti-parallel
Strand 3	F	106	112	anti-parallel
Strand 4	F	181	187	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	90	first strand
Strand 2	F	197	202	anti-parallel
Strand 3	F	125	133	anti-parallel
Strand 4	F	139	148	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	65	66	first strand
Strand 2	G	212	215	anti-parallel
Strand 3	G	106	112	anti-parallel
Strand 4	G	181	187	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	90	first strand
Strand 2	G	197	202	anti-parallel
Strand 3	G	125	133	anti-parallel
Strand 4	G	139	148	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	66	first strand
Strand 2	H	212	215	anti-parallel
Strand 3	H	106	112	anti-parallel
Strand 4	H	181	187	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	86	90	first strand
Strand 2	H	197	202	anti-parallel
Strand 3	H	125	133	anti-parallel
Strand 4	H	139	148	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	65	66	first strand
Strand 2	I	212	215	anti-parallel
Strand 3	I	106	112	anti-parallel
Strand 4	I	181	187	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	86	90	first strand
Strand 2	I	197	202	anti-parallel
Strand 3	I	125	133	anti-parallel
Strand 4	I	139	148	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	66	first strand
Strand 2	J	212	215	anti-parallel
Strand 3	J	106	112	anti-parallel
Strand 4	J	181	187	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	86	90	first strand
Strand 2	J	197	202	anti-parallel
Strand 3	J	125	133	anti-parallel
Strand 4	J	139	148	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	65	66	first strand
Strand 2	K	212	215	anti-parallel
Strand 3	K	106	112	anti-parallel
Strand 4	K	181	187	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	86	90	first strand
Strand 2	K	197	202	anti-parallel
Strand 3	K	125	133	anti-parallel
Strand 4	K	139	148	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DS5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DS5