Analysis of interatomic Contacts of Structural Units in PDB entry:
6DSP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DSP entry

There are 2 chains in PDB entry 6DSP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 22PHE 347
B
 VAL 22PHE 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6DSP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 51Right-handed alpha
Helix 2
AA2
A
63 77Right-handed alpha
Helix 3
AA3
A
88 102Right-handed alpha
Helix 4
AA4
A
114 118Right-handed 310
Helix 5
AA5
A
126 145Right-handed alpha
Helix 6
AA6
A
165 183Right-handed alpha
Helix 7
AA7
A
199 214Right-handed alpha
Helix 8
AA8
A
226 238Right-handed alpha
Helix 9
AA9
A
252 255Right-handed 310
Helix 10
AB1
A
256 262Right-handed alpha
Helix 11
AB2
A
272 289Right-handed alpha
Helix 12
AB3
A
313 315Right-handed 310
Helix 13
AB4
A
341 345Right-handed 310
Helix 14
AB5
B
33 51Right-handed alpha
Helix 15
AB6
B
63 77Right-handed alpha
Helix 16
AB7
B
88 102Right-handed alpha
Helix 17
AB8
B
114 118Right-handed 310
Helix 18
AB9
B
126 145Right-handed alpha
Helix 19
AC1
B
165 183Right-handed alpha
Helix 20
AC2
B
199 214Right-handed alpha
Helix 21
AC3
B
226 238Right-handed alpha
Helix 22
AC4
B
252 255Right-handed 310
Helix 23
AC5
B
256 262Right-handed alpha
Helix 24
AC6
B
272 289Right-handed alpha
Helix 25
AC7
B
313 315Right-handed 310
Helix 26
AC8
B
341 345Right-handed 310
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There are 10 sheets in PDB entry 6DSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
23 27parallel
Strand 3
A
81 84parallel
Strand 4
A
105 109parallel
Strand 5
A
120 123parallel
Strand 6
A
327 330parallel
Strand 7
A
310 311anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
155 160parallel
Strand 3
A
194 195parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
155 160parallel
Strand 3
A
219 222parallel
Strand 4
A
246 249parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 270first strand
Strand 2
A
335 337anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 301first strand
Strand 2
A
305 308anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
23 27parallel
Strand 3
B
81 84parallel
Strand 4
B
105 109parallel
Strand 5
B
120 123parallel
Strand 6
B
327 330parallel
Strand 7
B
310 311anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
155 160parallel
Strand 3
B
194 195parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
155 160parallel
Strand 3
B
219 222parallel
Strand 4
B
246 249parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 270first strand
Strand 2
B
335 337anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 301first strand
Strand 2
B
305 308anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il