Analysis of interatomic Contacts of Structural Units in PDB entry:
6DSQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DSQ entry

There are 2 chains in PDB entry 6DSQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 320
B
 MET 1ASN 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 6DSQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 15Right-handed alpha
Helix 2
AA2
A
25 39Right-handed alpha
Helix 3
AA3
A
41 48Right-handed alpha
Helix 4
AA4
A
49 56Right-handed 310
Helix 5
AA5
A
59 64Right-handed alpha
Helix 6
AA6
A
74 76Right-handed 310
Helix 7
AA7
A
77 95Right-handed alpha
Helix 8
AA8
A
96 98Right-handed 310
Helix 9
AA9
A
106 108Right-handed 310
Helix 10
AB1
A
112 129Right-handed alpha
Helix 11
AB2
A
142 155Right-handed alpha
Helix 12
AB3
A
171 177Right-handed alpha
Helix 13
AB4
A
196 198Right-handed 310
Helix 14
AB5
A
199 204Right-handed alpha
Helix 15
AB6
A
213 229Right-handed alpha
Helix 16
AB7
A
230 234Right-handed 310
Helix 17
AB8
A
245 256Right-handed alpha
Helix 18
AB9
A
273 281Right-handed alpha
Helix 19
AC1
A
284 286Right-handed 310
Helix 20
AC2
A
293 298Right-handed alpha
Helix 21
AC3
A
301 319Right-handed alpha
Helix 22
AC4
B
2 15Right-handed alpha
Helix 23
AC5
B
25 39Right-handed alpha
Helix 24
AC6
B
41 48Right-handed alpha
Helix 25
AC7
B
50 56Right-handed 310
Helix 26
AC8
B
59 64Right-handed alpha
Helix 27
AC9
B
77 95Right-handed alpha
Helix 28
AD1
B
96 98Right-handed 310
Helix 29
AD2
B
106 108Right-handed 310
Helix 30
AD3
B
112 129Right-handed alpha
Helix 31
AD4
B
142 155Right-handed alpha
Helix 32
AD5
B
166 170Right-handed 310
Helix 33
AD6
B
171 177Right-handed alpha
Helix 34
AD7
B
199 204Right-handed alpha
Helix 35
AD8
B
213 229Right-handed alpha
Helix 36
AD9
B
230 234Right-handed 310
Helix 37
AE1
B
245 256Right-handed alpha
Helix 38
AE2
B
272 281Right-handed alpha
Helix 39
AE3
B
284 286Right-handed 310
Helix 40
AE4
B
293 298Right-handed alpha
Helix 41
AE5
B
301 319Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6DSQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
100 104parallel
Strand 3
A
133 139parallel
Strand 4
A
161 164parallel
Strand 5
A
187 193parallel
Strand 6
A
237 241parallel
Strand 7
A
261 263parallel
Strand 8
A
288 292parallel
Strand 9
A
18 22parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
184 185anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
211 212anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 22first strand
Strand 2
B
100 104parallel
Strand 3
B
133 139parallel
Strand 4
B
162 164parallel
Strand 5
B
188 193parallel
Strand 6
B
237 241parallel
Strand 7
B
261 263parallel
Strand 8
B
288 292parallel
Strand 9
B
18 22parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
184 185anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
211 212anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il