Analysis of interatomic Contacts of Structural Units in PDB entry:
6DSS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DSS entry

There are 2 chains in PDB entry 6DSS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2MET 321
B
 GLY 2GLN 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6DSS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 15Right-handed alpha
Helix 2
AA2
A
25 39Right-handed alpha
Helix 3
AA3
A
41 48Right-handed alpha
Helix 4
AA4
A
49 56Right-handed 310
Helix 5
AA5
A
59 64Right-handed alpha
Helix 6
AA6
A
66 73Right-handed alpha
Helix 7
AA7
A
77 95Right-handed alpha
Helix 8
AA8
A
96 98Right-handed 310
Helix 9
AA9
A
106 109Right-handed 310
Helix 10
AB1
A
112 129Right-handed alpha
Helix 11
AB2
A
142 155Right-handed alpha
Helix 12
AB3
A
166 176Right-handed 310
Helix 13
AB4
A
199 204Right-handed alpha
Helix 14
AB5
A
213 229Right-handed alpha
Helix 15
AB6
A
230 234Right-handed 310
Helix 16
AB7
A
245 256Right-handed alpha
Helix 17
AB8
A
272 281Right-handed alpha
Helix 18
AB9
A
284 286Right-handed 310
Helix 19
AC1
A
293 298Right-handed alpha
Helix 20
AC2
A
301 320Right-handed alpha
Helix 21
AC3
B
3 15Right-handed alpha
Helix 22
AC4
B
25 39Right-handed alpha
Helix 23
AC5
B
41 50Right-handed alpha
Helix 24
AC6
B
51 56Right-handed 310
Helix 25
AC7
B
59 64Right-handed alpha
Helix 26
AC8
B
66 73Right-handed alpha
Helix 27
AC9
B
77 95Right-handed alpha
Helix 28
AD1
B
96 98Right-handed 310
Helix 29
AD2
B
106 108Right-handed 310
Helix 30
AD3
B
112 130Right-handed alpha
Helix 31
AD4
B
142 155Right-handed alpha
Helix 32
AD5
B
166 176Right-handed 310
Helix 33
AD6
B
199 204Right-handed alpha
Helix 34
AD7
B
213 229Right-handed alpha
Helix 35
AD8
B
230 234Right-handed 310
Helix 36
AD9
B
245 254Right-handed alpha
Helix 37
AE1
B
272 281Right-handed alpha
Helix 38
AE2
B
284 286Right-handed 310
Helix 39
AE3
B
293 298Right-handed alpha
Helix 40
AE4
B
301 318Right-handed alpha
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There are 6 sheets in PDB entry 6DSS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
100 104parallel
Strand 3
A
133 139parallel
Strand 4
A
161 164parallel
Strand 5
A
187 193parallel
Strand 6
A
237 241parallel
Strand 7
A
261 263parallel
Strand 8
A
288 292parallel
Strand 9
A
18 22parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
184 185anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
211 212anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 22first strand
Strand 2
B
100 104parallel
Strand 3
B
133 139parallel
Strand 4
B
161 164parallel
Strand 5
B
187 193parallel
Strand 6
B
237 241parallel
Strand 7
B
261 263parallel
Strand 8
B
288 292parallel
Strand 9
B
18 22parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
184 185anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
211 212anti-parallel
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