Analysis of interatomic Contacts of Structural Units in PDB entry:
6DSZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DSZ entry

There are 4 chains in PDB entry 6DSZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 1140
B	MET 1	HIS 1140
C	MET 1	PHE 19
D	MET 1	PHE 19

There are 14 helices in PDB entry 6DSZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	381	384	Right-handed 310
Helix 2	AA2	A	1044	1056	Right-handed alpha
Helix 3	AA3	A	1069	1075	Right-handed alpha
Helix 4	AA4	A	1095	1100	Right-handed 310
Helix 5	AA5	A	1101	1109	Right-handed alpha
Helix 6	AA6	A	1129	1137	Right-handed alpha
Helix 7	AA7	B	381	384	Right-handed 310
Helix 8	AA8	B	1044	1056	Right-handed alpha
Helix 9	AA9	B	1058	1062	Right-handed 310
Helix 10	AB1	B	1069	1074	Right-handed alpha
Helix 11	AB2	B	1090	1094	Right-handed 310
Helix 12	AB3	B	1095	1100	Right-handed 310
Helix 13	AB4	B	1129	1137	Right-handed alpha
Helix 14	AB5	D	2	6	Right-handed 310

There are 47 sheets in PDB entry 6DSZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	10	first strand
Strand 2	A	1037	1042	anti-parallel
Strand 3	A	1025	1032	anti-parallel
Strand 4	A	1004	1009	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	22	first strand
Strand 2	A	29	34	anti-parallel
Strand 3	A	38	45	anti-parallel
Strand 4	A	48	56	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	67	first strand
Strand 2	A	76	81	anti-parallel
Strand 3	A	85	92	anti-parallel
Strand 4	A	99	107	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	130	136	anti-parallel
Strand 3	A	139	144	anti-parallel
Strand 4	A	155	156	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	169	first strand
Strand 2	A	177	183	anti-parallel
Strand 3	A	188	196	anti-parallel
Strand 4	A	201	204	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	169	first strand
Strand 2	A	177	183	anti-parallel
Strand 3	A	188	196	anti-parallel
Strand 4	A	210	211	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	229	232	anti-parallel
Strand 3	A	237	241	anti-parallel
Strand 4	A	244	248	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	263	first strand
Strand 2	A	270	275	anti-parallel
Strand 3	A	279	287	anti-parallel
Strand 4	A	297	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	316	first strand
Strand 2	A	321	325	anti-parallel
Strand 3	A	331	336	anti-parallel
Strand 4	A	347	353	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	365	first strand
Strand 2	A	374	379	anti-parallel
Strand 3	A	386	392	anti-parallel
Strand 4	A	710	716	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	400	first strand
Strand 2	A	699	702	anti-parallel
Strand 3	A	690	694	anti-parallel
Strand 4	A	678	682	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	413	first strand
Strand 2	A	424	428	anti-parallel
Strand 3	A	433	437	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	467	471	anti-parallel
Strand 3	A	476	480	anti-parallel
Strand 4	A	486	490	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	503	first strand
Strand 2	A	507	512	anti-parallel
Strand 3	A	515	522	anti-parallel
Strand 4	A	525	533	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	542	first strand
Strand 2	A	555	560	anti-parallel
Strand 3	A	566	570	anti-parallel
Strand 4	A	576	578	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	594	first strand
Strand 2	A	601	606	anti-parallel
Strand 3	A	610	615	anti-parallel
Strand 4	A	629	630	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	640	first strand
Strand 2	A	649	652	anti-parallel
Strand 3	A	657	661	anti-parallel
Strand 4	A	666	670	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	720	727	first strand
Strand 2	A	732	742	anti-parallel
Strand 3	A	785	794	anti-parallel
Strand 4	A	801	806	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	811	819	first strand
Strand 2	A	828	835	anti-parallel
Strand 3	A	846	853	anti-parallel
Strand 4	A	858	866	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	874	875	first strand
Strand 2	A	880	884	anti-parallel
Strand 3	A	887	890	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	914	918	first strand
Strand 2	A	921	924	anti-parallel
Strand 3	A	931	935	anti-parallel
Strand 4	A	942	944	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	954	961	first strand
Strand 2	A	964	969	anti-parallel
Strand 3	A	973	979	anti-parallel
Strand 4	A	992	999	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	10	first strand
Strand 2	B	1037	1042	anti-parallel
Strand 3	B	1029	1032	anti-parallel
Strand 4	B	1004	1008	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	22	first strand
Strand 2	B	29	34	anti-parallel
Strand 3	B	38	45	anti-parallel
Strand 4	B	48	51	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	22	first strand
Strand 2	B	29	34	anti-parallel
Strand 3	B	38	45	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	67	first strand
Strand 2	B	76	81	anti-parallel
Strand 3	B	85	92	anti-parallel
Strand 4	B	99	102	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	130	136	anti-parallel
Strand 3	B	139	144	anti-parallel
Strand 4	B	155	156	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	169	first strand
Strand 2	B	177	183	anti-parallel
Strand 3	B	188	196	anti-parallel
Strand 4	B	201	204	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	169	first strand
Strand 2	B	177	183	anti-parallel
Strand 3	B	188	196	anti-parallel
Strand 4	B	210	211	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	221	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	237	241	anti-parallel
Strand 4	B	244	248	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	263	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	280	289	anti-parallel
Strand 4	B	295	306	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	316	first strand
Strand 2	B	321	325	anti-parallel
Strand 3	B	331	336	anti-parallel
Strand 4	B	347	353	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	365	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	386	392	anti-parallel
Strand 4	B	710	716	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	413	first strand
Strand 2	B	424	429	anti-parallel
Strand 3	B	432	437	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	460	first strand
Strand 2	B	467	471	anti-parallel
Strand 3	B	476	480	anti-parallel
Strand 4	B	486	490	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	503	first strand
Strand 2	B	507	512	anti-parallel
Strand 3	B	515	522	anti-parallel
Strand 4	B	525	533	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	542	first strand
Strand 2	B	555	560	anti-parallel
Strand 3	B	567	570	anti-parallel
Strand 4	B	576	578	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	565	first strand
Strand 2	B	581	582	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	594	first strand
Strand 2	B	601	606	anti-parallel
Strand 3	B	610	615	anti-parallel
Strand 4	B	629	630	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	637	641	first strand
Strand 2	B	648	652	anti-parallel
Strand 3	B	657	659	anti-parallel
Strand 4	B	669	670	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	678	680	first strand
Strand 2	B	691	694	anti-parallel
Strand 3	B	699	702	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	732	741	anti-parallel
Strand 3	B	786	794	anti-parallel
Strand 4	B	801	806	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	811	819	first strand
Strand 2	B	828	835	anti-parallel
Strand 3	B	846	853	anti-parallel
Strand 4	B	858	866	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	872	875	first strand
Strand 2	B	880	884	anti-parallel
Strand 3	B	887	890	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	892	893	first strand
Strand 2	B	899	900	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	914	916	first strand
Strand 2	B	921	925	anti-parallel
Strand 3	B	930	935	anti-parallel
Strand 4	B	942	944	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	954	961	first strand
Strand 2	B	964	969	anti-parallel
Strand 3	B	973	979	anti-parallel
Strand 4	B	992	999	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DSZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DSZ