Analysis of interatomic Contacts of Structural Units in PDB entry:
6DT1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DT1 entry

There are 8 chains in PDB entry 6DT1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	LEU 487
E	MET 1	LEU 487
B	G 1	T 10
C	G 12	A 21
D	T 22	C 42
F	G 1	T 10
G	G 12	A 21
H	T 22	C 42

There are 40 helices in PDB entry 6DT1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	11	Right-handed alpha
Helix 2	AA2	A	14	24	Right-handed alpha
Helix 3	AA3	A	28	40	Right-handed alpha
Helix 4	AA4	A	64	75	Right-handed alpha
Helix 5	AA5	A	83	97	Right-handed alpha
Helix 6	AA6	A	98	111	Right-handed alpha
Helix 7	AA7	A	118	126	Right-handed alpha
Helix 8	AA8	A	142	150	Right-handed alpha
Helix 9	AA9	A	173	175	Right-handed 310
Helix 10	AB1	A	190	201	Right-handed alpha
Helix 11	AB2	A	201	208	Right-handed alpha
Helix 12	AB3	A	253	266	Right-handed alpha
Helix 13	AB4	A	270	276	Right-handed alpha
Helix 14	AB5	A	287	292	Right-handed alpha
Helix 15	AB6	A	299	311	Right-handed alpha
Helix 16	AB7	A	327	341	Right-handed alpha
Helix 17	AB8	A	421	428	Right-handed alpha
Helix 18	AB9	A	428	433	Right-handed alpha
Helix 19	AC1	A	473	479	Right-handed alpha
Helix 20	AC2	A	480	486	Right-handed alpha
Helix 21	AC3	E	2	11	Right-handed alpha
Helix 22	AC4	E	14	24	Right-handed alpha
Helix 23	AC5	E	28	40	Right-handed alpha
Helix 24	AC6	E	64	75	Right-handed alpha
Helix 25	AC7	E	83	97	Right-handed alpha
Helix 26	AC8	E	98	110	Right-handed alpha
Helix 27	AC9	E	118	126	Right-handed alpha
Helix 28	AD1	E	142	150	Right-handed alpha
Helix 29	AD2	E	173	175	Right-handed 310
Helix 30	AD3	E	190	201	Right-handed alpha
Helix 31	AD4	E	201	208	Right-handed alpha
Helix 32	AD5	E	253	266	Right-handed alpha
Helix 33	AD6	E	270	276	Right-handed alpha
Helix 34	AD7	E	287	292	Right-handed alpha
Helix 35	AD8	E	299	311	Right-handed alpha
Helix 36	AD9	E	327	341	Right-handed alpha
Helix 37	AE1	E	421	428	Right-handed alpha
Helix 38	AE2	E	428	433	Right-handed alpha
Helix 39	AE3	E	473	479	Right-handed alpha
Helix 40	AE4	E	480	486	Right-handed alpha

There are 9 sheets in PDB entry 6DT1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	139	first strand
Strand 2	A	359	367	parallel
Strand 3	A	345	349	anti-parallel
Strand 4	A	154	158	anti-parallel
Strand 5	A	322	325	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	180	first strand
Strand 2	A	163	169	anti-parallel
Strand 3	A	212	222	anti-parallel
Strand 4	A	250	251	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	180	first strand
Strand 2	A	163	169	anti-parallel
Strand 3	A	212	222	anti-parallel
Strand 4	A	277	286	anti-parallel
Strand 5	A	317	319	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	405	first strand
Strand 2	A	389	395	anti-parallel
Strand 3	A	370	381	anti-parallel
Strand 4	A	436	441	anti-parallel
Strand 5	A	460	464	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	445	first strand
Strand 2	A	455	457	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	139	first strand
Strand 2	E	359	367	parallel
Strand 3	E	345	349	anti-parallel
Strand 4	E	154	158	anti-parallel
Strand 5	E	322	325	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	180	first strand
Strand 2	E	163	169	anti-parallel
Strand 3	E	212	220	anti-parallel
Strand 4	E	277	286	anti-parallel
Strand 5	E	317	319	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	402	405	first strand
Strand 2	E	389	395	anti-parallel
Strand 3	E	370	381	anti-parallel
Strand 4	E	436	441	anti-parallel
Strand 5	E	460	464	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	443	445	first strand
Strand 2	E	455	457	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DT1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DT1