Analysis of interatomic Contacts of Structural Units in PDB entry:
6DT8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DT8 entry

There are 4 chains in PDB entry 6DT8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASP 269
B
 MET 1SER 404
C
 A -1 A 10
D
 U 2 G 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6DT8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 17Right-handed alpha
Helix 2
AA2
A
18 28Right-handed alpha
Helix 3
AA3
A
34 42Right-handed alpha
Helix 4
AA4
A
45 60Right-handed alpha
Helix 5
AA5
A
64 72Right-handed alpha
Helix 6
AA6
A
73 75Right-handed 310
Helix 7
AA7
A
77 91Right-handed alpha
Helix 8
AA8
A
110 121Right-handed alpha
Helix 9
AA9
A
160 169Right-handed alpha
Helix 10
AB1
A
175 186Right-handed alpha
Helix 11
AB2
A
208 223Right-handed alpha
Helix 12
AB3
A
253 258Right-handed alpha
Helix 13
AB4
B
5 17Right-handed alpha
Helix 14
AB5
B
24 36Right-handed alpha
Helix 15
AB6
B
38 43Right-handed alpha
Helix 16
AB7
B
44 46Right-handed 310
Helix 17
AB8
B
48 64Right-handed alpha
Helix 18
AB9
B
78 89Right-handed alpha
Helix 19
AC1
B
90 97Right-handed alpha
Helix 20
AC2
B
113 127Right-handed alpha
Helix 21
AC3
B
133 146Right-handed alpha
Helix 22
AC4
B
151 156Right-handed alpha
Helix 23
AC5
B
159 173Right-handed alpha
Helix 24
AC6
B
173 185Right-handed alpha
Helix 25
AC7
B
238 260Right-handed alpha
Helix 26
AC8
B
262 274Right-handed alpha
Helix 27
AC9
B
284 300Right-handed alpha
Helix 28
AD1
B
303 310Right-handed 310
Helix 29
AD2
B
313 318Right-handed 310
Helix 30
AD3
B
319 329Right-handed alpha
Helix 31
AD4
B
347 349Right-handed 310
Helix 32
AD5
B
350 368Right-handed alpha
Helix 33
AD6
B
369 380Right-handed alpha
Helix 34
AD7
B
391 397Right-handed alpha
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There are 6 sheets in PDB entry 6DT8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
102 104anti-parallel
Strand 3
A
95 96anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
260 262anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 235first strand
Strand 2
A
241 244anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
343 346anti-parallel
Strand 3
B
338 339anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 197first strand
Strand 2
B
203 207anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 217first strand
Strand 2
B
222 230anti-parallel
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