Analysis of interatomic Contacts of Structural Units in PDB entry:
6DTD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DTD entry

There is 1 chain in PDB entry 6DTD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 36GLY 689
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6DTD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 67Right-handed alpha
Helix 2
AA2
A
74 79Right-handed 310
Helix 3
AA3
A
80 88Right-handed alpha
Helix 4
AA4
A
91 106Right-handed alpha
Helix 5
AA5
A
108 114Right-handed alpha
Helix 6
AA6
A
124 135Right-handed alpha
Helix 7
AA7
A
137 160Right-handed alpha
Helix 8
AA8
A
174 196Right-handed alpha
Helix 9
AA9
A
208 212Right-handed 310
Helix 10
AB1
A
241 251Right-handed alpha
Helix 11
AB2
A
254 263Right-handed alpha
Helix 12
AB3
A
273 283Right-handed alpha
Helix 13
AB4
A
300 314Right-handed alpha
Helix 14
AB5
A
316 321Right-handed alpha
Helix 15
AB6
A
324 329Right-handed alpha
Helix 16
AB7
A
359 371Right-handed alpha
Helix 17
AB8
A
413 422Right-handed 310
Helix 18
AB9
A
423 430Right-handed alpha
Helix 19
AC1
A
488 492Right-handed 310
Helix 20
AC2
A
501 513Right-handed alpha
Helix 21
AC3
A
517 545Right-handed alpha
Helix 22
AC4
A
550 559Right-handed alpha
Helix 23
AC5
A
564 568Right-handed 310
Helix 24
AC6
A
569 578Right-handed alpha
Helix 25
AC7
A
582 610Right-handed alpha
Helix 26
AC8
A
624 640Right-handed alpha
Helix 27
AC9
A
651 655Right-handed 310
Helix 28
AD1
A
657 670Right-handed alpha
Helix 29
AD2
A
670 675Right-handed alpha
Helix 30
AD3
A
677 685Right-handed alpha
Helix 31
AD4
A
696 700Right-handed 310
Helix 32
AD5
A
701 705Right-handed 310
Helix 33
AD6
A
707 725Right-handed alpha
Helix 34
AD7
A
726 729Right-handed 310
Helix 35
AD8
A
730 739Right-handed alpha
Helix 36
AD9
A
746 755Right-handed alpha
Helix 37
AE1
A
765 777Right-handed alpha
Helix 38
AE2
A
783 788Right-handed alpha
Helix 39
AE3
A
793 808Right-handed alpha
Helix 40
AE4
A
812 817Right-handed 310
Helix 41
AE5
A
826 830Right-handed 310
Helix 42
AE6
A
834 851Right-handed alpha
Helix 43
AE7
A
853 860Right-handed alpha
Helix 44
AE8
A
860 896Right-handed alpha
Helix 45
AE9
A
908 912Right-handed 310
Helix 46
AF1
A
913 920Right-handed alpha
Helix 47
AF2
A
923 927Right-handed 310
Helix 48
AF3
A
963 967Right-handed 310
Helix 49
AF4
A
969 975Right-handed alpha
Helix 50
AF5
A
977 983Right-handed alpha
Helix 51
AF6
A
992 996Right-handed 310
Helix 52
AF7
A
1000 1032Right-handed alpha
Helix 53
AF8
A
1039 1051Right-handed alpha
Helix 54
AF9
A
1054 1056Right-handed 310
Helix 55
AG1
A
1057 1073Right-handed alpha
Helix 56
AG2
A
1105 1125Right-handed alpha
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There are 7 sheets in PDB entry 6DTD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
350 352anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 411first strand
Strand 2
A
377 395anti-parallel
Strand 3
A
450 451anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 444first strand
Strand 2
A
377 395anti-parallel
Strand 3
A
457 462anti-parallel
Strand 4
A
495 498anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 477first strand
Strand 2
A
483 484anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 820first strand
Strand 2
A
832 833anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
931 940first strand
Strand 2
A
946 959anti-parallel
Strand 3
A
998 999parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
986 987first strand
Strand 2
A
1090 1091parallel
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