Analysis of interatomic Contacts of Structural Units in PDB entry:
6DTQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DTQ entry

There are 4 chains in PDB entry 6DTQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 19	LEU 409
B	ALA 19	LEU 409
C	ALA 19	LEU 409
D	ALA 19	LEU 409

There are 92 helices in PDB entry 6DTQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	47	Right-handed alpha
Helix 2	AA2	A	60	75	Right-handed alpha
Helix 3	AA3	A	88	93	Right-handed alpha
Helix 4	AA4	A	94	96	Right-handed 310
Helix 5	AA5	A	99	103	Right-handed 310
Helix 6	AA6	A	107	111	Right-handed 310
Helix 7	AA7	A	112	119	Right-handed alpha
Helix 8	AA8	A	141	147	Right-handed alpha
Helix 9	AA9	A	155	171	Right-handed alpha
Helix 10	AB1	A	182	196	Right-handed alpha
Helix 11	AB2	A	211	227	Right-handed alpha
Helix 12	AB3	A	232	238	Right-handed 310
Helix 13	AB4	A	239	249	Right-handed alpha
Helix 14	AB5	A	258	260	Right-handed 310
Helix 15	AB6	A	261	266	Right-handed alpha
Helix 16	AB7	A	305	320	Right-handed alpha
Helix 17	AB8	A	321	333	Right-handed alpha
Helix 18	AB9	A	338	343	Right-handed 310
Helix 19	AC1	A	344	351	Right-handed alpha
Helix 20	AC2	A	351	357	Right-handed alpha
Helix 21	AC3	A	357	364	Right-handed alpha
Helix 22	AC4	A	372	389	Right-handed alpha
Helix 23	AC5	A	393	409	Right-handed alpha
Helix 24	AC6	B	31	47	Right-handed alpha
Helix 25	AC7	B	60	75	Right-handed alpha
Helix 26	AC8	B	88	93	Right-handed alpha
Helix 27	AC9	B	94	96	Right-handed 310
Helix 28	AD1	B	99	103	Right-handed 310
Helix 29	AD2	B	107	111	Right-handed 310
Helix 30	AD3	B	112	119	Right-handed alpha
Helix 31	AD4	B	141	147	Right-handed alpha
Helix 32	AD5	B	155	171	Right-handed alpha
Helix 33	AD6	B	182	196	Right-handed alpha
Helix 34	AD7	B	211	227	Right-handed alpha
Helix 35	AD8	B	232	238	Right-handed 310
Helix 36	AD9	B	239	249	Right-handed alpha
Helix 37	AE1	B	258	260	Right-handed 310
Helix 38	AE2	B	261	266	Right-handed alpha
Helix 39	AE3	B	305	320	Right-handed alpha
Helix 40	AE4	B	321	333	Right-handed alpha
Helix 41	AE5	B	338	343	Right-handed 310
Helix 42	AE6	B	344	351	Right-handed alpha
Helix 43	AE7	B	351	357	Right-handed alpha
Helix 44	AE8	B	357	364	Right-handed alpha
Helix 45	AE9	B	372	389	Right-handed alpha
Helix 46	AF1	B	393	409	Right-handed alpha
Helix 47	AF2	C	31	47	Right-handed alpha
Helix 48	AF3	C	60	74	Right-handed alpha
Helix 49	AF4	C	88	93	Right-handed alpha
Helix 50	AF5	C	94	96	Right-handed 310
Helix 51	AF6	C	99	103	Right-handed 310
Helix 52	AF7	C	107	111	Right-handed 310
Helix 53	AF8	C	112	119	Right-handed alpha
Helix 54	AF9	C	141	147	Right-handed alpha
Helix 55	AG1	C	155	171	Right-handed alpha
Helix 56	AG2	C	182	196	Right-handed alpha
Helix 57	AG3	C	211	227	Right-handed alpha
Helix 58	AG4	C	232	238	Right-handed 310
Helix 59	AG5	C	239	249	Right-handed alpha
Helix 60	AG6	C	258	260	Right-handed 310
Helix 61	AG7	C	261	266	Right-handed alpha
Helix 62	AG8	C	305	320	Right-handed alpha
Helix 63	AG9	C	321	333	Right-handed alpha
Helix 64	AH1	C	338	343	Right-handed 310
Helix 65	AH2	C	344	351	Right-handed alpha
Helix 66	AH3	C	351	357	Right-handed alpha
Helix 67	AH4	C	357	364	Right-handed alpha
Helix 68	AH5	C	372	389	Right-handed alpha
Helix 69	AH6	C	393	409	Right-handed alpha
Helix 70	AH7	D	31	47	Right-handed alpha
Helix 71	AH8	D	60	75	Right-handed alpha
Helix 72	AH9	D	88	93	Right-handed alpha
Helix 73	AI1	D	94	96	Right-handed 310
Helix 74	AI2	D	99	103	Right-handed 310
Helix 75	AI3	D	107	111	Right-handed 310
Helix 76	AI4	D	112	119	Right-handed alpha
Helix 77	AI5	D	141	147	Right-handed alpha
Helix 78	AI6	D	155	171	Right-handed alpha
Helix 79	AI7	D	182	196	Right-handed alpha
Helix 80	AI8	D	211	227	Right-handed alpha
Helix 81	AI9	D	232	238	Right-handed 310
Helix 82	AJ1	D	239	249	Right-handed alpha
Helix 83	AJ2	D	258	260	Right-handed 310
Helix 84	AJ3	D	261	266	Right-handed alpha
Helix 85	AJ4	D	305	320	Right-handed alpha
Helix 86	AJ5	D	321	333	Right-handed alpha
Helix 87	AJ6	D	338	343	Right-handed 310
Helix 88	AJ7	D	344	351	Right-handed alpha
Helix 89	AJ8	D	351	357	Right-handed alpha
Helix 90	AJ9	D	357	364	Right-handed alpha
Helix 91	AK1	D	372	389	Right-handed alpha
Helix 92	AK2	D	393	409	Right-handed alpha

There are 16 sheets in PDB entry 6DTQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	50	56	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	85	first strand
Strand 2	A	293	300	anti-parallel
Strand 3	A	128	134	anti-parallel
Strand 4	A	335	336	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	124	125	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	176	first strand
Strand 2	A	252	257	parallel
Strand 3	A	136	140	anti-parallel
Strand 4	A	276	279	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	26	first strand
Strand 2	B	50	56	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	85	first strand
Strand 2	B	293	300	anti-parallel
Strand 3	B	128	134	anti-parallel
Strand 4	B	335	336	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	124	125	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	176	first strand
Strand 2	B	252	257	parallel
Strand 3	B	136	140	anti-parallel
Strand 4	B	276	279	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	50	56	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	85	first strand
Strand 2	C	293	300	anti-parallel
Strand 3	C	128	134	anti-parallel
Strand 4	C	335	336	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	124	125	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	176	first strand
Strand 2	C	252	257	parallel
Strand 3	C	136	140	anti-parallel
Strand 4	C	276	279	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	26	first strand
Strand 2	D	50	56	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	85	first strand
Strand 2	D	293	300	anti-parallel
Strand 3	D	128	134	anti-parallel
Strand 4	D	335	336	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	121	first strand
Strand 2	D	124	125	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	176	first strand
Strand 2	D	252	257	parallel
Strand 3	D	136	140	anti-parallel
Strand 4	D	276	279	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DTQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DTQ