Analysis of interatomic Contacts of Structural Units in PDB entry:
6DTR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DTR entry

There is 1 chain in PDB entry 6DTR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 19GLN 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 6DTR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 47Right-handed alpha
Helix 2
AA2
A
61 74Right-handed alpha
Helix 3
AA3
A
88 93Right-handed alpha
Helix 4
AA4
A
94 96Right-handed 310
Helix 5
AA5
A
99 103Right-handed 310
Helix 6
AA6
A
107 111Right-handed 310
Helix 7
AA7
A
112 119Right-handed alpha
Helix 8
AA8
A
141 147Right-handed alpha
Helix 9
AA9
A
155 171Right-handed alpha
Helix 10
AB1
A
182 196Right-handed alpha
Helix 11
AB2
A
211 227Right-handed alpha
Helix 12
AB3
A
232 238Right-handed 310
Helix 13
AB4
A
239 249Right-handed alpha
Helix 14
AB5
A
260 266Right-handed alpha
Helix 15
AB6
A
305 320Right-handed alpha
Helix 16
AB7
A
321 333Right-handed alpha
Helix 17
AB8
A
338 343Right-handed 310
Helix 18
AB9
A
344 351Right-handed alpha
Helix 19
AC1
A
351 357Right-handed alpha
Helix 20
AC2
A
357 362Right-handed alpha
Helix 21
AC3
A
372 389Right-handed alpha
Helix 22
AC4
A
393 409Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6DTR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 26first strand
Strand 2
A
50 56parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
291 300anti-parallel
Strand 3
A
128 134anti-parallel
Strand 4
A
335 336anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
291 300anti-parallel
Strand 3
A
364 365parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
124 125anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 176first strand
Strand 2
A
252 257parallel
Strand 3
A
136 140anti-parallel
Strand 4
A
276 279anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il