Analysis of interatomic Contacts of Structural Units in PDB entry:
6DU6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DU6 entry

There are 3 chains in PDB entry 6DU6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 21	ASN 527
B	SER 21	GLU 529
C	ASN 18	PRO 336

There are 82 helices in PDB entry 6DU6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	30	Right-handed alpha
Helix 2	AA2	A	55	66	Right-handed alpha
Helix 3	AA3	A	78	97	Right-handed alpha
Helix 4	AA4	A	143	147	Right-handed 310
Helix 5	AA5	A	160	164	Right-handed 310
Helix 6	AA6	A	220	234	Right-handed alpha
Helix 7	AA7	A	246	257	Right-handed alpha
Helix 8	AA8	A	271	277	Right-handed alpha
Helix 9	AA9	A	277	285	Right-handed alpha
Helix 10	AB1	A	291	299	Right-handed alpha
Helix 11	AB2	A	300	302	Right-handed 310
Helix 12	AB3	A	303	319	Right-handed alpha
Helix 13	AB4	A	329	334	Right-handed 310
Helix 14	AB5	A	339	353	Right-handed alpha
Helix 15	AB6	A	360	365	Right-handed alpha
Helix 16	AB7	A	368	386	Right-handed alpha
Helix 17	AB8	A	388	399	Right-handed alpha
Helix 18	AB9	A	406	422	Right-handed alpha
Helix 19	AC1	A	433	442	Right-handed alpha
Helix 20	AC2	A	454	461	Right-handed alpha
Helix 21	AC3	A	462	464	Right-handed 310
Helix 22	AC4	A	479	499	Right-handed alpha
Helix 23	AC5	B	23	30	Right-handed alpha
Helix 24	AC6	B	55	66	Right-handed alpha
Helix 25	AC7	B	78	97	Right-handed alpha
Helix 26	AC8	B	161	165	Right-handed 310
Helix 27	AC9	B	220	234	Right-handed alpha
Helix 28	AD1	B	247	261	Right-handed alpha
Helix 29	AD2	B	271	277	Right-handed alpha
Helix 30	AD3	B	277	285	Right-handed alpha
Helix 31	AD4	B	292	299	Right-handed alpha
Helix 32	AD5	B	300	302	Right-handed 310
Helix 33	AD6	B	303	319	Right-handed alpha
Helix 34	AD7	B	329	334	Right-handed 310
Helix 35	AD8	B	339	353	Right-handed alpha
Helix 36	AD9	B	360	365	Right-handed alpha
Helix 37	AE1	B	368	386	Right-handed alpha
Helix 38	AE2	B	388	400	Right-handed alpha
Helix 39	AE3	B	405	422	Right-handed alpha
Helix 40	AE4	B	433	442	Right-handed alpha
Helix 41	AE5	B	454	461	Right-handed alpha
Helix 42	AE6	B	462	464	Right-handed 310
Helix 43	AE7	B	479	499	Right-handed alpha
Helix 44	AE8	C	23	30	Right-handed alpha
Helix 45	AE9	C	55	66	Right-handed alpha
Helix 46	AF1	C	78	97	Right-handed alpha
Helix 47	AF2	C	220	234	Right-handed alpha
Helix 48	AF3	C	245	261	Right-handed alpha
Helix 49	AF4	C	271	277	Right-handed alpha
Helix 50	AF5	C	277	285	Right-handed alpha
Helix 51	AF6	C	291	299	Right-handed alpha
Helix 52	AF7	C	300	302	Right-handed 310
Helix 53	AF8	C	303	319	Right-handed alpha
Helix 54	AF9	C	329	334	Right-handed 310
Helix 55	AG1	C	339	353	Right-handed alpha
Helix 56	AG2	C	368	386	Right-handed alpha
Helix 57	AG3	C	388	399	Right-handed alpha
Helix 58	AG4	C	405	422	Right-handed alpha
Helix 59	AG5	C	433	442	Right-handed alpha
Helix 60	AG6	C	454	461	Right-handed alpha
Helix 61	AG7	C	462	464	Right-handed 310
Helix 62	AG8	C	479	499	Right-handed alpha
Helix 63	AG9	D	23	30	Right-handed alpha
Helix 64	AH1	D	55	66	Right-handed alpha
Helix 65	AH2	D	78	97	Right-handed alpha
Helix 66	AH3	D	220	234	Right-handed alpha
Helix 67	AH4	D	246	261	Right-handed alpha
Helix 68	AH5	D	271	277	Right-handed alpha
Helix 69	AH6	D	277	285	Right-handed alpha
Helix 70	AH7	D	292	299	Right-handed alpha
Helix 71	AH8	D	300	302	Right-handed 310
Helix 72	AH9	D	303	319	Right-handed alpha
Helix 73	AI1	D	329	334	Right-handed 310
Helix 74	AI2	D	339	353	Right-handed alpha
Helix 75	AI3	D	360	365	Right-handed alpha
Helix 76	AI4	D	368	386	Right-handed alpha
Helix 77	AI5	D	388	400	Right-handed alpha
Helix 78	AI6	D	405	422	Right-handed alpha
Helix 79	AI7	D	433	442	Right-handed alpha
Helix 80	AI8	D	454	461	Right-handed alpha
Helix 81	AI9	D	462	464	Right-handed 310
Helix 82	AJ1	D	479	499	Right-handed alpha

There are 14 sheets in PDB entry 6DU6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	48	first strand
Strand 2	A	69	71	parallel
Strand 3	A	107	109	parallel
Strand 4	A	237	240	parallel
Strand 5	A	264	269	parallel
Strand 6	A	287	290	parallel
Strand 7	A	322	324	parallel
Strand 8	A	356	359	parallel
Strand 9	A	44	48	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	200	201	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	156	first strand
Strand 2	A	137	141	parallel
Strand 3	A	192	195	anti-parallel
Strand 4	A	179	183	anti-parallel
Strand 5	A	171	174	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	471	first strand
Strand 2	A	448	452	parallel
Strand 3	A	425	429	parallel
Strand 4	A	507	512	parallel
Strand 5	A	520	526	anti-parallel
Strand 6	D	522	527	anti-parallel
Strand 7	D	506	511	anti-parallel
Strand 8	D	425	429	parallel
Strand 9	D	448	452	parallel
Strand 10	D	467	471	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	48	first strand
Strand 2	B	69	73	parallel
Strand 3	B	107	111	parallel
Strand 4	B	237	240	parallel
Strand 5	B	264	269	parallel
Strand 6	B	287	291	parallel
Strand 7	B	322	325	parallel
Strand 8	B	356	359	parallel
Strand 9	B	44	48	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	206	208	anti-parallel
Strand 3	B	171	174	anti-parallel
Strand 4	B	179	186	anti-parallel
Strand 5	B	191	197	anti-parallel
Strand 6	B	137	140	anti-parallel
Strand 7	B	154	155	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	200	201	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	471	first strand
Strand 2	B	448	452	parallel
Strand 3	B	426	429	parallel
Strand 4	B	506	511	parallel
Strand 5	B	522	527	anti-parallel
Strand 6	C	520	526	anti-parallel
Strand 7	C	507	512	anti-parallel
Strand 8	C	425	429	parallel
Strand 9	C	448	452	parallel
Strand 10	C	467	471	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	48	first strand
Strand 2	C	69	73	parallel
Strand 3	C	107	111	parallel
Strand 4	C	237	240	parallel
Strand 5	C	264	268	parallel
Strand 6	C	287	290	parallel
Strand 7	C	322	324	parallel
Strand 8	C	356	359	parallel
Strand 9	C	44	48	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	200	201	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	154	156	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	197	first strand
Strand 2	C	179	186	anti-parallel
Strand 3	C	171	174	anti-parallel
Strand 4	C	207	208	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	48	first strand
Strand 2	D	69	73	parallel
Strand 3	D	107	111	parallel
Strand 4	D	237	240	parallel
Strand 5	D	264	269	parallel
Strand 6	D	287	291	parallel
Strand 7	D	322	325	parallel
Strand 8	D	356	359	parallel
Strand 9	D	44	48	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	156	first strand
Strand 2	D	137	141	parallel
Strand 3	D	190	197	anti-parallel
Strand 4	D	179	186	anti-parallel
Strand 5	D	171	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DU6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DU6