Analysis of interatomic Contacts of Structural Units in PDB entry:
6DU8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DU8 entry

There are 4 chains in PDB entry 6DU8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 101	ASN 561
B	LEU 101	ASN 561
C	LEU 101	ASN 561
D	LEU 101	ASN 561

There are 52 helices in PDB entry 6DU8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	119	Right-handed alpha
Helix 2	AA2	A	126	138	Right-handed alpha
Helix 3	AA3	A	147	151	Right-handed 310
Helix 4	AA4	A	156	161	Right-handed alpha
Helix 5	AA5	A	249	254	Right-handed alpha
Helix 6	AA6	A	277	291	Right-handed alpha
Helix 7	AA7	A	355	376	Right-handed alpha
Helix 8	AA8	A	385	420	Right-handed alpha
Helix 9	AA9	A	428	452	Right-handed alpha
Helix 10	AB1	A	453	455	Right-handed 310
Helix 11	AB2	A	481	499	Right-handed alpha
Helix 12	AB3	A	510	522	Right-handed alpha
Helix 13	AB4	A	536	560	Right-handed alpha
Helix 14	AB5	B	104	119	Right-handed alpha
Helix 15	AB6	B	126	138	Right-handed alpha
Helix 16	AB7	B	147	151	Right-handed 310
Helix 17	AB8	B	156	161	Right-handed alpha
Helix 18	AB9	B	249	254	Right-handed alpha
Helix 19	AC1	B	277	291	Right-handed alpha
Helix 20	AC2	B	355	376	Right-handed alpha
Helix 21	AC3	B	385	420	Right-handed alpha
Helix 22	AC4	B	428	452	Right-handed alpha
Helix 23	AC5	B	453	455	Right-handed 310
Helix 24	AC6	B	481	499	Right-handed alpha
Helix 25	AC7	B	510	522	Right-handed alpha
Helix 26	AC8	B	536	560	Right-handed alpha
Helix 27	AC9	C	104	119	Right-handed alpha
Helix 28	AD1	C	126	138	Right-handed alpha
Helix 29	AD2	C	147	151	Right-handed 310
Helix 30	AD3	C	156	161	Right-handed alpha
Helix 31	AD4	C	249	254	Right-handed alpha
Helix 32	AD5	C	277	291	Right-handed alpha
Helix 33	AD6	C	355	376	Right-handed alpha
Helix 34	AD7	C	385	420	Right-handed alpha
Helix 35	AD8	C	428	452	Right-handed alpha
Helix 36	AD9	C	453	455	Right-handed 310
Helix 37	AE1	C	481	499	Right-handed alpha
Helix 38	AE2	C	510	522	Right-handed alpha
Helix 39	AE3	C	536	560	Right-handed alpha
Helix 40	AE4	D	104	119	Right-handed alpha
Helix 41	AE5	D	126	138	Right-handed alpha
Helix 42	AE6	D	147	151	Right-handed 310
Helix 43	AE7	D	156	161	Right-handed alpha
Helix 44	AE8	D	249	254	Right-handed alpha
Helix 45	AE9	D	277	291	Right-handed alpha
Helix 46	AF1	D	355	376	Right-handed alpha
Helix 47	AF2	D	385	420	Right-handed alpha
Helix 48	AF3	D	428	452	Right-handed alpha
Helix 49	AF4	D	453	455	Right-handed 310
Helix 50	AF5	D	481	499	Right-handed alpha
Helix 51	AF6	D	510	522	Right-handed alpha
Helix 52	AF7	D	536	560	Right-handed alpha

There are 8 sheets in PDB entry 6DU8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	A	298	309	anti-parallel
Strand 3	A	202	204	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	A	298	309	anti-parallel
Strand 3	A	314	323	anti-parallel
Strand 4	A	333	339	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	298	309	anti-parallel
Strand 3	B	202	204	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	298	309	anti-parallel
Strand 3	B	314	323	anti-parallel
Strand 4	B	333	339	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	194	first strand
Strand 2	C	298	309	anti-parallel
Strand 3	C	202	204	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	194	first strand
Strand 2	C	298	309	anti-parallel
Strand 3	C	314	323	anti-parallel
Strand 4	C	333	339	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	194	first strand
Strand 2	D	298	309	anti-parallel
Strand 3	D	202	204	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	194	first strand
Strand 2	D	298	309	anti-parallel
Strand 3	D	314	323	anti-parallel
Strand 4	D	333	339	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DU8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DU8