Analysis of interatomic Contacts of Structural Units in PDB entry:
6DUE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DUE entry

There is 1 chain in PDB entry 6DUE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 33SER 777
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6DUE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 49Right-handed alpha
Helix 2
AA2
A
97 101Right-handed 310
Helix 3
AA3
A
103 107Right-handed 310
Helix 4
AA4
A
111 125Right-handed alpha
Helix 5
AA5
A
149 159Right-handed alpha
Helix 6
AA6
A
168 184Right-handed alpha
Helix 7
AA7
A
198 211Right-handed alpha
Helix 8
AA8
A
219 228Right-handed alpha
Helix 9
AA9
A
228 237Right-handed alpha
Helix 10
AB1
A
276 281Right-handed alpha
Helix 11
AB2
A
289 299Right-handed alpha
Helix 12
AB3
A
300 307Right-handed alpha
Helix 13
AB4
A
311 315Right-handed 310
Helix 14
AB5
A
329 344Right-handed alpha
Helix 15
AB6
A
347 365Right-handed alpha
Helix 16
AB7
A
384 399Right-handed alpha
Helix 17
AB8
A
401 410Right-handed alpha
Helix 18
AB9
A
426 458Right-handed alpha
Helix 19
AC1
A
482 504Right-handed alpha
Helix 20
AC2
A
504 514Right-handed alpha
Helix 21
AC3
A
526 535Right-handed alpha
Helix 22
AC4
A
539 549Right-handed alpha
Helix 23
AC5
A
554 566Right-handed alpha
Helix 24
AC6
A
598 604Right-handed alpha
Helix 25
AC7
A
608 617Right-handed alpha
Helix 26
AC8
A
620 627Right-handed alpha
Helix 27
AC9
A
642 659Right-handed alpha
Helix 28
AD1
A
681 692Right-handed alpha
Helix 29
AD2
A
693 698Right-handed alpha
Helix 30
AD3
A
699 703Right-handed 310
Helix 31
AD4
A
711 718Right-handed alpha
Helix 32
AD5
A
719 721Right-handed 310
Helix 33
AD6
A
722 727Right-handed alpha
Helix 34
AD7
A
732 745Right-handed alpha
Helix 35
AD8
A
747 749Right-handed 310
Helix 36
AD9
A
761 772Right-handed alpha
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There are 7 sheets in PDB entry 6DUE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
68 72anti-parallel
Strand 3
A
55 61anti-parallel
Strand 4
A
37 40anti-parallel
Strand 5
A
89 90anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
135 139anti-parallel
Strand 3
A
662 669parallel
Strand 4
A
187 192parallel
Strand 5
A
467 471parallel
Strand 6
A
251 258anti-parallel
Strand 7
A
264 272anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
244 248anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
381 382anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 416first strand
Strand 2
A
419 424anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 574first strand
Strand 2
A
582 587anti-parallel
Strand 3
A
590 595anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 710first strand
Strand 2
A
757 760anti-parallel
Strand 3
A
751 753anti-parallel
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