Analysis of interatomic Contacts of Structural Units in PDB entry:
6DUS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DUS entry

There are 2 chains in PDB entry 6DUS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 26ARG 335
B
 GLY 28ARG 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6DUS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 60Right-handed 310
Helix 2
AA2
A
74 86Right-handed alpha
Helix 3
AA3
A
100 114Right-handed alpha
Helix 4
AA4
A
123 125Right-handed 310
Helix 5
AA5
A
127 131Right-handed 310
Helix 6
AA6
A
133 147Right-handed alpha
Helix 7
AA7
A
154 172Right-handed alpha
Helix 8
AA8
A
176 183Right-handed alpha
Helix 9
AA9
A
186 201Right-handed alpha
Helix 10
AB1
A
202 208Right-handed alpha
Helix 11
AB2
A
269 282Right-handed alpha
Helix 12
AB3
A
292 301Right-handed alpha
Helix 13
AB4
A
307 316Right-handed alpha
Helix 14
AB5
A
325 330Right-handed 310
Helix 15
AB6
B
56 60Right-handed 310
Helix 16
AB7
B
74 86Right-handed alpha
Helix 17
AB8
B
100 114Right-handed alpha
Helix 18
AB9
B
123 125Right-handed 310
Helix 19
AC1
B
127 131Right-handed 310
Helix 20
AC2
B
133 147Right-handed alpha
Helix 21
AC3
B
155 172Right-handed alpha
Helix 22
AC4
B
176 183Right-handed alpha
Helix 23
AC5
B
186 201Right-handed alpha
Helix 24
AC6
B
202 208Right-handed alpha
Helix 25
AC7
B
269 282Right-handed alpha
Helix 26
AC8
B
292 301Right-handed alpha
Helix 27
AC9
B
307 316Right-handed alpha
Helix 28
AD1
B
325 330Right-handed 310
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There are 6 sheets in PDB entry 6DUS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
35 42anti-parallel
Strand 3
A
238 241anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
91 96parallel
Strand 3
A
48 53parallel
Strand 4
A
220 225parallel
Strand 5
A
256 266anti-parallel
Strand 6
A
244 249anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
322 323anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
35 42anti-parallel
Strand 3
B
238 241anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 121first strand
Strand 2
B
91 96parallel
Strand 3
B
48 53parallel
Strand 4
B
220 225parallel
Strand 5
B
254 266anti-parallel
Strand 6
B
244 251anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 231first strand
Strand 2
B
322 323anti-parallel
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