Analysis of interatomic Contacts of Structural Units in PDB entry:
6DV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DV1 entry

There are 2 chains in PDB entry 6DV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 658LYS 862
B
 SER 648LYS 862
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6DV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
668 676Right-handed alpha
Helix 2
AA2
A
677 703Right-handed alpha
Helix 3
AA3
A
710 731Right-handed alpha
Helix 4
AA4
A
738 766Right-handed alpha
Helix 5
AA5
A
769 794Right-handed alpha
Helix 6
AA6
A
811 841Right-handed alpha
Helix 7
AA7
B
668 676Right-handed alpha
Helix 8
AA8
B
677 704Right-handed alpha
Helix 9
AA9
B
710 731Right-handed alpha
Helix 10
AB1
B
738 766Right-handed alpha
Helix 11
AB2
B
769 795Right-handed alpha
Helix 12
AB3
B
811 842Right-handed alpha
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There are 3 sheets in PDB entry 6DV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
799 803first strand
Strand 2
A
806 810anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
652 654first strand
Strand 2
B
664 666anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
799 803first strand
Strand 2
B
806 810anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il