Analysis of interatomic Contacts of Structural Units in PDB entry:
6DVI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DVI entry

There are 4 chains in PDB entry 6DVI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 0	ARG 393
B	MET 0	ARG 393
C	MET 0	ARG 393
D	MET 0	ALA 117

There are133 helices in PDB entry 6DVI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	4	Right-handed 310
Helix 2	AA2	A	5	15	Right-handed alpha
Helix 3	AA3	A	25	37	Right-handed alpha
Helix 4	AA4	A	38	47	Right-handed alpha
Helix 5	AA5	A	52	61	Right-handed alpha
Helix 6	AA6	A	100	105	Right-handed alpha
Helix 7	AA7	A	109	122	Right-handed alpha
Helix 8	AA8	A	134	142	Right-handed alpha
Helix 9	AA9	A	156	170	Right-handed alpha
Helix 10	AB1	A	187	193	Right-handed alpha
Helix 11	AB2	A	196	201	Right-handed 310
Helix 12	AB3	A	204	209	Right-handed alpha
Helix 13	AB4	A	210	222	Right-handed alpha
Helix 14	AB5	A	224	231	Right-handed alpha
Helix 15	AB6	A	232	234	Right-handed 310
Helix 16	AB7	A	235	243	Right-handed alpha
Helix 17	AB8	A	248	258	Right-handed alpha
Helix 18	AB9	A	270	280	Right-handed alpha
Helix 19	AC1	A	289	293	Right-handed 310
Helix 20	AC2	A	300	313	Right-handed alpha
Helix 21	AC3	A	325	335	Right-handed alpha
Helix 22	AC4	A	343	377	Right-handed alpha
Helix 23	AC5	A	380	384	Right-handed 310
Helix 24	AC6	A	385	387	Right-handed 310
Helix 25	AC7	B	2	4	Right-handed 310
Helix 26	AC8	B	5	12	Right-handed alpha
Helix 27	AC9	B	25	34	Right-handed alpha
Helix 28	AD1	B	38	47	Right-handed alpha
Helix 29	AD2	B	52	62	Right-handed alpha
Helix 30	AD3	B	100	105	Right-handed alpha
Helix 31	AD4	B	109	122	Right-handed alpha
Helix 32	AD5	B	134	142	Right-handed alpha
Helix 33	AD6	B	156	170	Right-handed alpha
Helix 34	AD7	B	187	193	Right-handed alpha
Helix 35	AD8	B	196	200	Right-handed 310
Helix 36	AD9	B	204	209	Right-handed alpha
Helix 37	AE1	B	210	217	Right-handed alpha
Helix 38	AE2	B	226	231	Right-handed alpha
Helix 39	AE3	B	240	244	Right-handed 310
Helix 40	AE4	B	248	258	Right-handed alpha
Helix 41	AE5	B	270	280	Right-handed alpha
Helix 42	AE6	B	289	293	Right-handed 310
Helix 43	AE7	B	300	312	Right-handed alpha
Helix 44	AE8	B	325	336	Right-handed alpha
Helix 45	AE9	B	343	377	Right-handed alpha
Helix 46	AF1	B	385	387	Right-handed 310
Helix 47	AF2	C	2	4	Right-handed 310
Helix 48	AF3	C	5	15	Right-handed alpha
Helix 49	AF4	C	25	37	Right-handed alpha
Helix 50	AF5	C	38	47	Right-handed alpha
Helix 51	AF6	C	52	61	Right-handed alpha
Helix 52	AF7	C	100	105	Right-handed 310
Helix 53	AF8	C	109	122	Right-handed alpha
Helix 54	AF9	C	134	142	Right-handed alpha
Helix 55	AG1	C	156	170	Right-handed alpha
Helix 56	AG2	C	187	193	Right-handed alpha
Helix 57	AG3	C	196	201	Right-handed 310
Helix 58	AG4	C	204	209	Right-handed alpha
Helix 59	AG5	C	210	220	Right-handed alpha
Helix 60	AG6	C	224	231	Right-handed alpha
Helix 61	AG7	C	232	234	Right-handed 310
Helix 62	AG8	C	235	243	Right-handed alpha
Helix 63	AG9	C	248	259	Right-handed alpha
Helix 64	AH1	C	270	280	Right-handed alpha
Helix 65	AH2	C	289	293	Right-handed 310
Helix 66	AH3	C	300	312	Right-handed alpha
Helix 67	AH4	C	325	335	Right-handed alpha
Helix 68	AH5	C	343	354	Right-handed alpha
Helix 69	AH6	C	354	377	Right-handed alpha
Helix 70	AH7	C	385	387	Right-handed 310
Helix 71	AH8	D	7	11	Right-handed 310
Helix 72	AH9	D	25	35	Right-handed alpha
Helix 73	AI1	D	38	47	Right-handed alpha
Helix 74	AI2	D	52	61	Right-handed alpha
Helix 75	AI3	D	100	105	Right-handed 310
Helix 76	AI4	D	109	122	Right-handed alpha
Helix 77	AI5	D	134	142	Right-handed alpha
Helix 78	AI6	D	156	170	Right-handed alpha
Helix 79	AI7	D	204	209	Right-handed alpha
Helix 80	AI8	D	210	215	Right-handed alpha
Helix 81	AI9	D	270	280	Right-handed alpha
Helix 82	AJ1	D	289	293	Right-handed 310
Helix 83	AJ2	D	304	313	Right-handed alpha
Helix 84	AJ3	D	325	334	Right-handed alpha
Helix 85	AJ4	D	343	354	Right-handed alpha
Helix 86	AJ5	D	354	376	Right-handed alpha
Helix 87	AJ6	D	385	387	Right-handed 310
Helix 88	AJ7	E	5	16	Right-handed alpha
Helix 89	AJ8	E	25	36	Right-handed alpha
Helix 90	AJ9	E	38	47	Right-handed alpha
Helix 91	AK1	E	52	61	Right-handed alpha
Helix 92	AK2	E	101	105	Right-handed 310
Helix 93	AK3	E	109	122	Right-handed alpha
Helix 94	AK4	E	136	141	Right-handed alpha
Helix 95	AK5	E	158	171	Right-handed alpha
Helix 96	AK6	E	187	192	Right-handed alpha
Helix 97	AK7	E	196	201	Right-handed 310
Helix 98	AK8	E	204	209	Right-handed alpha
Helix 99	AK9	E	210	221	Right-handed alpha
Helix 100	AL1	E	225	231	Right-handed alpha
Helix 101	AL2	E	232	234	Right-handed 310
Helix 102	AL3	E	235	243	Right-handed alpha
Helix 103	AL4	E	248	257	Right-handed alpha
Helix 104	AL5	E	270	280	Right-handed alpha
Helix 105	AL6	E	304	313	Right-handed alpha
Helix 106	AL7	E	325	336	Right-handed alpha
Helix 107	AL8	E	343	353	Right-handed alpha
Helix 108	AL9	E	354	377	Right-handed alpha
Helix 109	AM1	F	2	4	Right-handed 310
Helix 110	AM2	F	5	16	Right-handed alpha
Helix 111	AM3	F	25	34	Right-handed alpha
Helix 112	AM4	F	38	46	Right-handed alpha
Helix 113	AM5	F	52	61	Right-handed alpha
Helix 114	AM6	F	100	105	Right-handed alpha
Helix 115	AM7	F	109	122	Right-handed alpha
Helix 116	AM8	F	134	143	Right-handed alpha
Helix 117	AM9	F	156	170	Right-handed alpha
Helix 118	AN1	F	187	192	Right-handed alpha
Helix 119	AN2	F	196	201	Right-handed 310
Helix 120	AN3	F	204	209	Right-handed alpha
Helix 121	AN4	F	212	216	Right-handed 310
Helix 122	AN5	F	217	222	Right-handed alpha
Helix 123	AN6	F	225	230	Right-handed alpha
Helix 124	AN7	F	231	234	Right-handed 310
Helix 125	AN8	F	235	240	Right-handed alpha
Helix 126	AN9	F	248	257	Right-handed alpha
Helix 127	AO1	F	270	280	Right-handed alpha
Helix 128	AO2	F	289	293	Right-handed 310
Helix 129	AO3	F	301	303	Right-handed 310
Helix 130	AO4	F	304	313	Right-handed alpha
Helix 131	AO5	F	326	335	Right-handed alpha
Helix 132	AO6	F	344	376	Right-handed alpha
Helix 133	AO7	F	385	387	Right-handed 310

There are 18 sheets in PDB entry 6DVI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	389	391	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	87	89	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	125	127	parallel
Strand 3	A	147	151	parallel
Strand 4	A	175	178	parallel
Strand 5	A	263	268	parallel
Strand 6	A	284	287	parallel
Strand 7	A	317	319	parallel
Strand 8	A	339	342	parallel
Strand 9	A	93	95	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	389	391	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	84	first strand
Strand 2	B	87	89	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	125	127	parallel
Strand 3	B	147	151	parallel
Strand 4	B	174	178	parallel
Strand 5	B	263	268	parallel
Strand 6	B	284	287	parallel
Strand 7	B	317	319	parallel
Strand 8	B	339	342	parallel
Strand 9	B	93	95	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	389	391	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	84	first strand
Strand 2	C	87	89	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	125	127	parallel
Strand 3	C	147	151	parallel
Strand 4	C	175	178	parallel
Strand 5	C	263	268	parallel
Strand 6	C	284	287	parallel
Strand 7	C	317	319	parallel
Strand 8	C	339	342	parallel
Strand 9	C	93	95	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	67	first strand
Strand 2	D	389	391	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	84	first strand
Strand 2	D	87	89	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	125	127	parallel
Strand 3	D	147	151	parallel
Strand 4	D	174	178	parallel
Strand 5	D	263	268	parallel
Strand 6	D	284	287	parallel
Strand 7	D	317	319	parallel
Strand 8	D	339	342	parallel
Strand 9	D	93	95	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	67	first strand
Strand 2	E	389	391	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	84	first strand
Strand 2	E	87	89	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	95	first strand
Strand 2	E	125	127	parallel
Strand 3	E	147	151	parallel
Strand 4	E	175	178	parallel
Strand 5	E	263	268	parallel
Strand 6	E	284	287	parallel
Strand 7	E	317	319	parallel
Strand 8	E	339	342	parallel
Strand 9	E	93	95	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	67	first strand
Strand 2	F	389	391	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	84	first strand
Strand 2	F	87	89	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	93	95	first strand
Strand 2	F	125	127	parallel
Strand 3	F	147	151	parallel
Strand 4	F	175	178	parallel
Strand 5	F	263	266	parallel
Strand 6	F	284	287	parallel
Strand 7	F	317	319	parallel
Strand 8	F	339	342	parallel
Strand 9	F	93	95	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DVI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DVI